Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04229 and RBAM_026010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_04229___ytxB.1.9828.seq
# -bsequence dna-align/RBAM_026010___ytxB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04229___ytxB-RBAM_026010___ytxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04229___ytxB-RBAM_026010___ytxB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04229___ytxB
# 2: RBAM_026010___ytxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity: 451/675 (66.8%)
# Similarity: 451/675 (66.8%)
# Gaps: 66/675 ( 9.8%)
# Score: 1383.0
#
#
#=======================================
BSNT_04229___ 1 ATGA--AACGAAAAACGGCTGTCAAAT-GGCT--GGCAGTGCTTGCAGGT 45
|||| || .||.|.||||||||..| |||| |||.|.| ||.||.
RBAM_026010__ 1 ATGAGGAA--TAAGAAGGCTGTCACTTGGGCTGCGGCTGCG---GCGGGA 45
BSNT_04229___ 46 GCTGG---TTTACTCTATTGGGGAAA---CAAAACGTATTTGAATGTATC 89
||.|| |||.|| .||||.||| |||| |||.|||||.|.||
RBAM_026010__ 46 GCGGGCCTTTTGCT---GTGGGCAAACCGCAAA---TATCTGAATCTGTC 89
BSNT_04229___ 90 GCCGAAAGAAATCAGGGTATGGGTATTGTCGTTCGGAGTCTTTGCACCTC 139
|||.||.||.|||.||.|.|||||.||.||||||||.||.|||||.||.|
RBAM_026010__ 90 GCCTAAGGAGATCCGGCTGTGGGTGTTATCGTTCGGTGTTTTTGCGCCGC 139
BSNT_04229___ 140 TGATGTTTATCGGGATATCCATCGTCAGGCCACTTGTTTTATTTCCGGTG 189
|..||||||||||.||.||||||||||||||..||||..|.|||||.||.
RBAM_026010__ 140 TTGTGTTTATCGGAATTTCCATCGTCAGGCCTTTTGTGCTGTTTCCCGTA 189
BSNT_04229___ 190 TCTGTTATTTCAATAGCTGGCGGACTTGCGTTTGGCCCGCTTCTCGGCAC 239
||..|..||||..|.||.||.|||.|.|||||.|||||||||.|||||||
RBAM_026010__ 190 TCAATCGTTTCCGTCGCCGGAGGATTGGCGTTCGGCCCGCTTTTCGGCAC 239
BSNT_04229___ 240 GCTTTATACGTTATTCGGTTCGATGTGCGCTTCAGCTGTTTCGTTTTTTG 289
..|.||||||.|....||.||.|||.|||||.|.||.|..||.|||||||
RBAM_026010__ 240 CGTGTATACGCTGGCGGGCTCAATGGGCGCTGCCGCCGCGTCTTTTTTTG 289
BSNT_04229___ 290 CGGCCGGTTTGTTTTCGGC-------GA-AAAAGAACGGGCATTACGAAA 331
||||.||..||||| || || ||||| |.|.||| |.||
RBAM_026010__ 290 CGGCGGGGCTGTTT---GCCTTTAATGAGAAAAG--CCGTCAT---GGAA 331
BSNT_04229___ 332 GGCTTGAAGCCATACAGAAGCAAATGGAGGATAAC----GGATTTTTCTA 377
...|.||||||||.||.||||| ||.||.||| ||.||.||.||
RBAM_026010__ 332 AAATGGAAGCCATTCAAAAGCA----GATGAAAACCAATGGCTTCTTTTA 377
BSNT_04229___ 378 TATCTTTCTTTTGAGAATCCTGCCGATCAATTTTGATTTCGTCAGCTATG 427
|||.|||.|..||.|.||.|||||..|.||.||||||.|..|||||||||
RBAM_026010__ 378 TATTTTTATCCTGCGCATTCTGCCTGTTAACTTTGATGTGATCAGCTATG 427
BSNT_04229___ 428 CGGCAGGCCTTTCCAATGTCAAAGCGCTGCCGTATTTTGCGGCAACGGCT 477
|.||.|||||.||.||.||||...||.||.||||||||..|||.||.||.
RBAM_026010__ 428 CCGCGGGCCTATCGAAAGTCAGGCCGATGACGTATTTTTTGGCGACCGCA 477
BSNT_04229___ 478 GTGGGAATCATCCCTGGGACGATTGCGCTTAATGTGCTGGGTGCGAGCTT 527
|.|||.|||||.||.||||||||.|..||.||||||||.||.||||||||
RBAM_026010__ 478 GCGGGCATCATTCCGGGGACGATCGTCCTGAATGTGCTCGGCGCGAGCTT 527
BSNT_04229___ 528 TTTGGCTGGCAAT---CTGCCCGCTTTCTTTATG--GTGCTCGCTTTGTA 572
|.||.|.||.||| |||.|||...|| | |||.||..|.|.||
RBAM_026010__ 528 TATGTCCGGAAATGTGCTGACCGTACTC-----GGCGTGATCTGTCTTTA 572
BSNT_04229___ 573 TATCGTGTTTATCTCAC-TGCCGTTCATCTTCAGAAAGAAAATGCAAAAC 621
.|||||.|||.|.||.| |.||||| ||.||.|.||||||..|||...|.
RBAM_026010__ 573 CATCGTATTTTTATCGCTTCCCGTT-ATATTTAAAAAGAAGGTGCGCCAT 621
BSNT_04229___ 622 TTGTTCCAAG----AATCAAATTAA 642
||||||...| ||.|.||
RBAM_026010__ 622 TTGTTCGGCGGTGAAAGCTAA---- 642
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