Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04077 and RBAM_025120
See
Amino acid alignment /
Visit
BSNT_04077 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_04077.1.9828.seq
# -bsequence dna-align/RBAM_025120___comC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04077-RBAM_025120___comC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04077-RBAM_025120___comC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04077
# 2: RBAM_025120___comC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity: 379/805 (47.1%)
# Similarity: 379/805 (47.1%)
# Gaps: 320/805 (39.8%)
# Score: 1093.0
#
#
#=======================================
BSNT_04077 0 -------------------------------------------------- 0
RBAM_025120__ 1 GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTA 50
BSNT_04077 0 -------------------------------------------------- 0
RBAM_025120__ 51 TACAGCAGCGTGCCGTATCCCGCTGCGAATCTCGGTTATTTCGCCGCGTT 100
BSNT_04077 0 -------------------------------------------------- 0
RBAM_025120__ 101 CAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCC 150
BSNT_04077 0 -------------------------------------------------- 0
RBAM_025120__ 151 GTCGTTTCCTATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAA 200
BSNT_04077 1 ----------ATGTATCCCGCAGCAGA--GCTTGTGACAGCGTGTTTATT 38
||||||||.||.||.|| ||| .|||.||.||||||||
RBAM_025120__ 201 GCTGTCGGTTATGTATCCGGCGGCGGAATGCT--GGACGGCATGTTTATT 248
BSNT_04077 39 TGCCGCCGCAGGAATACGCTTTGGCACGTCGCT----GGAACTGTT--TC 82
..|.||.|||||.||.|..||.| ||..|| .|||||||| ||
RBAM_025120__ 249 CACGGCTGCAGGCATTCATTTCG----GTTTCTCAAAAGAACTGTTAGTC 294
BSNT_04077 83 CCGCTGTGGTGTTTATCTCTCTTCTCATTATTGTTGCAGTGACAGATATT 132
.|||||| |.|||.|.|||||.|||||.||||||.|..||||.|||.|.
RBAM_025120__ 295 GCGCTGT--TATTTCTGTCTCTGCTCATGATTGTTACTATGACGGATCTG 342
BSNT_04077 133 CATTTTATGCTGATTC----CAAA--TCGTATATTGATTTTCTTTCTTCC 176
||.|.||||||||||| |||| || ||.|.||.||||||||
RBAM_025120__ 343 CAATATATGCTGATTCCTGACAAAGTTC------TGCTGTTTTTTCTTCC 386
BSNT_04077 177 -CTTTTTGGCGGCCGCGAGATTGATTTCTCCGCTTGATTCCTGGTATGCA 225
|||||...| ||||.|.|..||.||||||||||.|||||.|||||||||
RBAM_025120__ 387 GCTTTTCATC-GCCGGGCGTATGTTTTCTCCGCTGGATTCATGGTATGCA 435
BSNT_04077 226 GGCCTGTTAGGTGCGGCAGC------CGGATTTCTATTTCTGGCTGTAAT 269
|| ||| |||.|.||| ||||||| ||||||..|||..|
RBAM_025120__ 436 GG---GTT---TGCCGGAGCCGTTTGCGGATTT---TTTCTGCTTGTTTT 476
BSNT_04077 270 TGCCGCAATCACCCAT-------------GGGGGAGTAGGGGGAGGAGAT 306
| || ||| ||.||..|.||.|.|||.|||
RBAM_025120__ 477 T------AT----CATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGAT 516
BSNT_04077 307 ATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAA-----TG 351
.|.|||.|.||||.||||||.|||.|...|||.||.|| ||| ||
RBAM_025120__ 517 GTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGT--AAAGCTCGTG 564
BSNT_04077 352 CTGGCAGCTGCCTT-TTTCTTTTCTGTTTTGATAGGTGCATTATATG--- 397
|| || .|||.|| |||| ||||.|||.||||.||.||..||||.|
RBAM_025120__ 565 CT--CA-TTGCATTCTTTC-TTTCCGTTATGATCGGAGCCGTATACGGTA 610
BSNT_04077 398 ---GAGCGGCAGCCGTTCTGACTGGTAGACTCGCTAAAAGGCAGCCGCTT 444
|.||.|||||| |.| ||.||.||.|.|||||.||||||..||
RBAM_025120__ 611 TGTGCGCCGCAGCC---CGG---GGCAGGCTTGGTAAAAAGCAGCCATTT 654
BSNT_04077 445 CCCTTTGCCCCCGCTATAGCCGCAGGGAGC-ATTTTAGCCTATTTATACG 493
||.|||||.||.||.||..|.||.|||||| .|||.|| .||||||||||
RBAM_025120__ 655 CCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAG-TTATTTATACG 703
BSNT_04077 494 GTGA----CTCTATCATTTCTTTTTATATCAAAATGGCATT------GGG 533
|||| ||.| ||||.|||||.|||||..|.|| || |||
RBAM_025120__ 704 GTGAAGAGCTGT----TTTCGTTTTACATCAAGCTCGC-TTCAGGAGGGG 748
BSNT_04077 534 C-TGA 537
| |||
RBAM_025120__ 749 CTTGA 753
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.