Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03888 and RBAM_024140
See
Amino acid alignment /
Visit
BSNT_03888 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_03888___yrdA.1.9828.seq
# -bsequence dna-align/RBAM_024140___yrdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03888___yrdA-RBAM_024140___yrdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03888___yrdA-RBAM_024140___yrdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03888___yrdA
# 2: RBAM_024140___yrdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity: 446/504 (88.5%)
# Similarity: 446/504 (88.5%)
# Gaps: 3/504 ( 0.6%)
# Score: 2010.0
#
#
#=======================================
BSNT_03888___ 1 GTGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAGTTCGAAGCAGA 50
.|||||||||||||||||||||||||||||||||||||.||||||||.||
RBAM_024140__ 1 ATGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAATTCGAAGCCGA 50
BSNT_03888___ 51 TGCTACACAGAAACTATTAAATAATCTGACTGATGAATCACTTAAACAAG 100
|||.|||||.|||||..|.|||.|||||||||||||||||||||||||||
RBAM_024140__ 51 TGCGACACAAAAACTGCTGAATCATCTGACTGATGAATCACTTAAACAAG 100
BSNT_03888___ 101 AAATAACTTCACAAAATTGGACTCTAGGCCGTATTGCTTGGCATACTGTT 150
||||.|||||||||.||||||||.|.|||||||||||.|||||||||||.
RBAM_024140__ 101 AAATCACTTCACAACATTGGACTTTGGGCCGTATTGCATGGCATACTGTC 150
BSNT_03888___ 151 GCTGCCATTCGCATCATTACCTCAAACACAGACTTAACGTTCCATGCCCC 200
||||||||||.|||||||||||||||||||||.||||||||.||.||.||
RBAM_024140__ 151 GCTGCCATTCACATCATTACCTCAAACACAGATTTAACGTTTCACGCTCC 200
BSNT_03888___ 201 AGCTGAAGATTATCCTGTTCCAACTTCGGCTCAGTTTATAGCTGACAGCT 250
.||.|||||||||||||||||..|.|||||.|.||||||.|||||.||.|
RBAM_024140__ 201 GGCCGAAGATTATCCTGTTCCTGCATCGGCGCGGTTTATTGCTGAGAGTT 250
BSNT_03888___ 251 ATCATCAAGCCAGTAATGCATTTGTACAGGCATTAAAAACCCAATGGACT 300
|||||||||||||||||||||||||||||||.||||||||.|||||||||
RBAM_024140__ 251 ATCATCAAGCCAGTAATGCATTTGTACAGGCGTTAAAAACGCAATGGACT 300
BSNT_03888___ 301 GACCATACACTTCAAGAACGTATCAACTTTATCGGACAACAATTGCCTAA 350
|||.||||||||||||||.||.||||||||||.||.||.||||||||.||
RBAM_024140__ 301 GACGATACACTTCAAGAATGTGTCAACTTTATTGGTCAGCAATTGCCAAA 350
BSNT_03888___ 351 CGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCACCATCGGGGAC 400
.||||||||||||||||||||||||||||||||||||||.|||||.||||
RBAM_024140__ 351 TGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCATCATCGAGGAC 400
BSNT_03888___ 401 AAATGACTGTTCTTATGAGACAAGCAGGTTTAACTGTTCCAGGTATTTAT 450
||||||||||.|||||||||||||||||||||.|||||||.||||||||.
RBAM_024140__ 401 AAATGACTGTCCTTATGAGACAAGCAGGTTTACCTGTTCCGGGTATTTAC 450
BSNT_03888___ 451 GGTCCAGCAAAAGAAGAATGGGCAAAATTTGGTTTGGAAGCCCCGAAAAT 500
|||||.||||||||.||||||...|||||.|||||||||||.||||||..
RBAM_024140__ 451 GGTCCGGCAAAAGAGGAATGGATTAAATTCGGTTTGGAAGCTCCGAAATA 500
BSNT_03888___ 501 GTAA 504
|
RBAM_024140__ 501 G--- 501
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.