Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03818 and RBAM_023960

See Amino acid alignment / Visit BSNT_03818 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_03818___aroD.1.9828.seq
#    -bsequence dna-align/RBAM_023960___aroE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03818___aroD-RBAM_023960___aroE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03818___aroD-RBAM_023960___aroE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03818___aroD
# 2: RBAM_023960___aroE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 867
# Identity:     626/867 (72.2%)
# Similarity:   626/867 (72.2%)
# Gaps:          48/867 ( 5.5%)
# Score: 2191.5
# 
#
#=======================================

BSNT_03818___      1 ATGAAAAAGCTGTACGGGGTTATCGGAAATCCGATTGGCCATTCTATGTC     50
                     ||||||.|..|||||||.||.||||||||||||||.||.|||||.|||||
RBAM_023960__      1 ATGAAACAATTGTACGGAGTAATCGGAAATCCGATCGGGCATTCAATGTC     50

BSNT_03818___     51 ACCTGATATTCATAACGCATCATTGAAAG------ACCTCGGGCTTGACG     94
                     |||.||||||||||||||..|.|||.|||      ||.||      .|||
RBAM_023960__     51 ACCCGATATTCATAACGCGGCTTTGCAAGATAAGAACATC------AACG     94

BSNT_03818___     95 GACATTATCATGCCTTCAAGGTAGAAGAGGATGATCTGGAGGATGCGGTA    144
                     |.||.|||..|||.||..||||.|||....||.||||..||||.||.||.
RBAM_023960__     95 GGCAGTATTTTGCGTTTCAGGTGGAACCTCATCATCTCAAGGACGCCGTT    144

BSNT_03818___    145 AAAGGAAT-AAGAGCTCTAGGCGTACAAGGAATCAATGTGACTGTTCCGC    193
                     ||.||||| ||| ||.||.|||.|....|||.|.||.||.||.||.||||
RBAM_023960__    145 AACGGAATCAAG-GCGCTTGGCATCTGCGGAGTGAACGTCACAGTCCCGC    193

BSNT_03818___    194 ACAAGGTTTCCATTATGGATTATCTGGATCATATTGATGAGAGTGCAAAA    243
                     |.||.||..|.||.|||||..||||||||.|.||..||||.||.||.|||
RBAM_023960__    194 ATAAAGTCGCGATCATGGAGCATCTGGATGAAATACATGAAAGCGCGAAA    243

BSNT_03818___    244 GTGATCGGTGCCGTAAACACGGTCAGAAGAGAGGGAGATAAGCTTGTCGG    293
                     ||..||||.||||||||.||.||||.||||||||||||.|.|||..||||
RBAM_023960__    244 GTACTCGGGGCCGTAAATACCGTCAAAAGAGAGGGAGACAGGCTCATCGG    293

BSNT_03818___    294 ATACAATACCGATGGGGAAGGCTTCGTGAAGTCATTAATGAAGGTATTAG    343
                     .||.|||||.||.||.||.||.||....||.||.|||.|.||.|||||.|
RBAM_023960__    294 GTATAATACTGACGGAGATGGGTTTTATAAATCCTTAGTCAAAGTATTGG    343

BSNT_03818___    344 ACAAGCCCATCTCTGAACTGTCATTCTTAATGATCGGCGCTGGCGGAGCG    393
                     ||||.||.||.||.||.||.||..||.|.|||||.||.||.||.||||||
RBAM_023960__    344 ACAAACCGATATCAGAGCTCTCCATCCTCATGATTGGGGCGGGAGGAGCG    393

BSNT_03818___    394 GCGAGAGCCATTTTTACAACAATTGTCCG-AAATACCCCGAAAAAATTTG    442
                     ||.|||||.||||||||.||.||.||||| |.|.| .||||||.||||||
RBAM_023960__    394 GCAAGAGCGATTTTTACGACGATCGTCCGCAGAGA-GCCGAAACAATTTG    442

BSNT_03818___    443 ACATTTGCAACCGGACGTTAGAAAAAGCAAAGCGGCTTACAGAAGCTACT    492
                     ||.||||||||||.|||...|||||||||.|..|.||.|..|..|||.||
RBAM_023960__    443 ACGTTTGCAACCGCACGCCGGAAAAAGCAGAAAGTCTGATTGCGGCTGCT    492

BSNT_03818___    493 CCCTCGTTTCACAATAAAGAAG----TA-TTAAGCATAAAAGAAGCAGAA    537
                     |||||.|||||..|.|||...|    || ||     ||||||||||.|||
RBAM_023960__    493 CCCTCTTTTCAGCAGAAACGCGCCCTTACTT-----TAAAAGAAGCTGAA    537

BSNT_03818___    538 GAACGTCTTGAGCAGTATGATGTTATCATCCATACAACGTCTGTGGGCAT    587
                     .|.|..|||||.||.|||||.||.||.||.||||||||.|||||.|||||
RBAM_023960__    538 AATCAGCTTGAACAATATGACGTCATTATTCATACAACATCTGTCGGCAT    587

BSNT_03818___    588 GTATCCGAACGTGGATGATGTGCCGCTTTCATTACAGCGTGCC---GCGA    634
                     |||||||||...|||||..||||||||.|||||..|.||.|||   .||.
RBAM_023960__    588 GTATCCGAAAACGGATGCCGTGCCGCTCTCATTGGAACGGGCCAAAACGG    637

BSNT_03818___    635 GCAGTGCCGTCGTATGTGATATCGTGTATAATCCAATACAGACGGCCCTT    684
                     ||   |||.||||.|||||||||||.||.||.||.||.||.|||||..|.
RBAM_023960__    638 GC---GCCATCGTTTGTGATATCGTATACAACCCGATTCAAACGGCGTTC    684

BSNT_03818___    685 TTAAAGGAAGC---AAGCCAAAAAGGCTTGAAAACACTCGACGGTGTGGG    731
                     |||||.|||||   ||   |||.|||.||.|.|||.||.||||||||.||
RBAM_023960__    685 TTAAAAGAAGCTGAAA---AAAGAGGTTTAACAACCCTTGACGGTGTCGG    731

BSNT_03818___    732 CATGTTTGTTGAACAGGCAGCATTGTCTTTCCAATTGTGGACTGGACAAG    781
                     |||||||||.||||||||.|||.||||||||.|..|||||||.|.|||||
RBAM_023960__    732 CATGTTTGTGGAACAGGCCGCACTGTCTTTCAAGCTGTGGACGGAACAAG    781

BSNT_03818___    782 AGCCTGATA-----TTGAAAAAATGAGATCCATTGTAATAGGAAAATTAG    826
                     |||||||.|     ||     |||||||.|.|||||..||||||||.|||
RBAM_023960__    782 AGCCTGACAGCGGCTT-----AATGAGAGCGATTGTTGTAGGAAAACTAG    826

BSNT_03818___    827 GAGGAACAGAATGTTAA    843
                     ||||||||.||||||||
RBAM_023960__    827 GAGGAACACAATGTTAA    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03818 and RBAM_023960

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
