Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03752 and RBAM_023480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_03752___yqfO.1.9828.seq
# -bsequence dna-align/RBAM_023480___yqfO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03752___yqfO-RBAM_023480___yqfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03752___yqfO-RBAM_023480___yqfO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03752___yqfO
# 2: RBAM_023480___yqfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1138
# Identity: 874/1138 (76.8%)
# Similarity: 874/1138 (76.8%)
# Gaps: 32/1138 ( 2.8%)
# Score: 3255.0
#
#
#=======================================
BSNT_03752___ 1 ATGGATAAAAGTGTAAATGGGCAGCAGATCATCCAGCTGTTTGAACAATT 50
|||..||||..|||.||.||.|||.|.|||||||||||||||||||||||
RBAM_023480__ 1 ATGCTTAAACATGTGAACGGACAGGAAATCATCCAGCTGTTTGAACAATT 50
BSNT_03752___ 51 TTCTCCGAAAGCCTATGCGGTTGAAGGAGATAAAATCGGCCTGCAAATCG 100
|||.|||||.||.|.||||||.|||||||||||||||||||||||.||||
RBAM_023480__ 51 TTCACCGAAGGCTTTTGCGGTGGAAGGAGATAAAATCGGCCTGCAGATCG 100
BSNT_03752___ 101 GCACTTTAAACAAACCAATTAAAAATGTGATGGTTACACTTGATGTGTTA 150
|.||.||.||.||.||..|.||||||||.|||||.|||||.|||||..|.
RBAM_023480__ 101 GTACATTGAATAAGCCGGTGAAAAATGTCATGGTGACACTGGATGTTCTG 150
BSNT_03752___ 151 GA--GAGCGTTATCGATGAAGCGATTGAAAAAGAGGTTGACTTGATTATT 198
|| .|.||.|| ||||||||.|||||.|||.|.||||||||.|||||.
RBAM_023480__ 151 GAACAAACGGTA--GATGAAGCCATTGAGAAAAAAGTTGACTTAATTATC 198
BSNT_03752___ 199 GCACACCATCCTCCTATTTTCCGGCCGCTAAAGCATATTTCAACAGATCA 248
||.||||||||.||.|||||.||||||||.||.||.||..|.||.|||||
RBAM_023480__ 199 GCCCACCATCCGCCGATTTTTCGGCCGCTTAAACAGATCACCACTGATCA 248
BSNT_03752___ 249 GCCTGCCGGAAGGTTAATTGAAAAGTGTTTGAAGCATGATATTGCTGTTT 298
|||||.||||||..|.|||||.||.|||.|.||||||||||||||.||.|
RBAM_023480__ 249 GCCTGGCGGAAGACTGATTGAGAAATGTATAAAGCATGATATTGCCGTAT 298
BSNT_03752___ 299 ATGCAGCTCATACAAATTTAGACGTTGCGGACGGCGGCGTGAATGATTTG 348
||||.||||||||.|||.|.||.||.|||||||||||.|||||||||.||
RBAM_023480__ 299 ATGCGGCTCATACGAATCTTGATGTAGCGGACGGCGGTGTGAATGATCTG 348
BSNT_03752___ 349 CTTGCTGAAGCATTAGAGCTGAGTGAGACGGAAGTGCTGGCACCTACTTA 398
|||||.|||||..|.|..||||..||.||.||||||||.|..||.||.||
RBAM_023480__ 349 CTTGCCGAAGCTCTCGGCCTGACAGACACAGAAGTGCTCGTCCCGACATA 398
BSNT_03752___ 399 TACGGATCCTCTGAAAAAGCTGGCAGTTTACGTGCCGAAGGAATATGAAG 448
|.|||||||.|||||||||||.||.||.||.||.|||||.||.|||||||
RBAM_023480__ 399 TTCGGATCCGCTGAAAAAGCTTGCCGTATATGTTCCGAAAGACTATGAAG 448
BSNT_03752___ 449 AGCAG--GTCAGAGCCGCGGTTGGAAATGCGGGGGCCGGCCATATCGGTG 496
| || ||.|||.|.||..||||.||.||.||.||.||.||||||||..
RBAM_023480__ 449 A--AGCTGTAAGAACTGCACTTGGCAACGCCGGAGCGGGACATATCGGCA 496
BSNT_03752___ 497 AATACAGCCATTGCGCGTTTTCATCTGAAGGAATCGGCAGCTTTAAGCCA 546
|.|||||||||||||||||.||.|||||.||||||||||||||||||||.
RBAM_023480__ 497 ATTACAGCCATTGCGCGTTCTCCTCTGAGGGAATCGGCAGCTTTAAGCCG 546
BSNT_03752___ 547 TTGGACGGAGCTAAGCCTTTTATCGGTGAAGTGGGAGAGCTTGAGCTTGT 596
.||||.||.||..|.||.||||||||..|...|||||||||.||.||.||
RBAM_023480__ 547 CTGGAAGGGGCAGAACCGTTTATCGGACAGACGGGAGAGCTGGAACTCGT 596
BSNT_03752___ 597 TCATGAAGTAAGACTTGAGACTGTATTTCCTAAAAGCATCGAAAAAGCTG 646
.||||||||.|||||||||||.||.|||||...|||.||.||.|||.|.|
RBAM_023480__ 597 CCATGAAGTGAGACTTGAGACCGTTTTTCCGGCAAGTATGGAGAAAACCG 646
BSNT_03752___ 647 TTATCAACGCAATGATAAAAAGCCATCCATATGAAGAAGTCGCTTACGAT 696
|..|.||.||..|||.||||||||||||.||||||||.||.||.||.|||
RBAM_023480__ 647 TCGTAAAAGCGCTGAAAAAAAGCCATCCGTATGAAGAGGTGGCATATGAT 696
BSNT_03752___ 697 ATCTATCCTGTCGAACAGACTCCCGC-CGAAAAAGGGCTCGGCCGTGTCG 745
||.|||||.||.||.|||.|| |||| .|||||||||||||||||..|||
RBAM_023480__ 697 ATTTATCCGGTGGAGCAGTCT-CCGCTTGAAAAAGGGCTCGGCCGCATCG 745
BSNT_03752___ 746 GAACCCTTAA--AACTGAGATGACGCTCAAGGAATTCGCTTTATTTGTGA 793
|||..|||.| || ||.||||||||..|.||.||.||..|.|||||||
RBAM_023480__ 746 GAAAACTTCAGCAA--GAAATGACGCTTGAAGAGTTTGCGCTGTTTGTGA 793
BSNT_03752___ 794 AAGACAAGCTTGACGTCAATGGTGTCAGAATGGTGGGGGATGCTG--ACA 841
||||.|||.|||||||.||.||.|||.|.|||||.||.|| || | |||
RBAM_023480__ 794 AAGAAAAGTTTGACGTTAACGGAGTCCGGATGGTCGGAGA-GC-GAAACA 841
BSNT_03752___ 842 GCATGGTGAAAAAGGTAGCTGTTCTTGGCGGAGATGGAAACAAGTATATT 891
|||.|||||||||.||.||.|||||||||||.||.|||||.||.||||||
RBAM_023480__ 842 GCAAGGTGAAAAAAGTCGCGGTTCTTGGCGGTGACGGAAATAAATATATT 891
BSNT_03752___ 892 CATCATGCAAAACGAAAGGGAGCCGATGTTTACGTCACAGGAGATTTATA 941
.||||.|||||.||.||.||.||.|||||||||||.||.||.|||.|.||
RBAM_023480__ 892 TATCAGGCAAAGCGGAAAGGTGCAGATGTTTACGTGACGGGCGATCTTTA 941
BSNT_03752___ 942 CTTCCATGTGGCCCATGATGCGATGATGCTTGGCCTAAATGTGGTTGATC 991
.||||||||.||.|||||||||||||||.|.||..||||.||.||.||.|
RBAM_023480__ 942 TTTCCATGTAGCGCATGATGCGATGATGATGGGATTAAACGTCGTGGACC 991
BSNT_03752___ 992 CGGGCCATTACGCAGAAAAAATCATGAAAGAAGGCGTCAC----GAGAAA 1037
||||.|||||.||.|||||.|||||||.|.|||| ||| ||| ||
RBAM_023480__ 992 CGGGGCATTATGCTGAAAAGATCATGAGAAAAGG---CACGGCTGAG-AA 1037
BSNT_03752___ 1038 ACTGACATCAATG--TGTAACGATAAAAAGTTTGACGTGAATATCTTTGT 1085
.||.||..||||| .|.| ||.|||||.|.|||.|||...||.||.|.
RBAM_023480__ 1038 GCTTACGGCAATGGCCGGA--GAGAAAAACTATGATGTGCGCATTTTCGC 1085
BSNT_03752___ 1086 TTCTGAAACAGATACAAATCCATTTACATTTC-TATAA 1122
|||.||||||||||||||.|||||||| |||| |||||
RBAM_023480__ 1086 TTCCGAAACAGATACAAACCCATTTAC-TTTCTTATAA 1122
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