Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03706 and RBAM_023160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03706___yqgT.1.9828.seq
# -bsequence dna-align/RBAM_023160___yqgT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03706___yqgT-RBAM_023160___yqgT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03706___yqgT-RBAM_023160___yqgT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03706___yqgT
# 2: RBAM_023160___yqgT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1214
# Identity: 780/1214 (64.3%)
# Similarity: 780/1214 (64.3%)
# Gaps: 172/1214 (14.2%)
# Score: 2323.0
#
#
#=======================================
BSNT_03706___ 1 ATGGCGTTTATTACG-GTGAAACCTGAGATCAA---------GAACAATT 40
||||||...||| || ||.||||||||..|.|| |||..||.
RBAM_023160__ 1 ATGGCGGGAATT-CGTGTCAAACCTGAATTGAAACAGCATATGAAAGATA 49
BSNT_03706___ 41 TGGC-----------CAATGTGGCGAAAGAACTGAAGATAGACGAGGAAT 79
|.|| |||| ||..|||| |||||..||.||.||..||
RBAM_023160__ 50 TTGCAAAGGTGCTTTCAAT-TGATGAAA-AACTGTTGAAAGCCGCTGA-- 95
BSNT_03706___ 80 TGCTTAAAAGTGCAAATCGCTCCGCACAAAAACATCAATTGTATTGCCCT 129
||||| |.||..||||..||.||||.|.|||.||.
RBAM_023160__ 96 ----TAAAA------------CGGCGGAAAACGATGAATTATTTTGTCCC 129
BSNT_03706___ 130 GGTTAT---GTGATAGAGGAG-CATAG----CGGCAAAGAGCTTCAAACC 171
||.|.| ||||..|.|.|| ||.|| ||.| ||||.|
RBAM_023160__ 130 GGCTTTGCCGTGAGCGGGCAGTCAGAGGGTCCGCC-----GCTTGA---- 170
BSNT_03706___ 172 ATTCAGGACATAAAGC--GCTTT----TTACAGCCTCGGCAGC--TGAAA 213
|||....||| ||||| .||||.| ||||| | |||||
RBAM_023160__ 171 ------GACGCTGAGCGGGCTTTCGCGATACATC--CGGCA-CTGTGAAA 211
BSNT_03706___ 214 -----CTTT---CAGATAGCTGGATTGAGCAAGAGAAAATCTATGATGAT 255
|||| |.|||...|||.|..||.||||.||..|.||.| |.|
RBAM_023160__ 212 GGATTCTTTCCGCTGATCAATGGGTGAAGGAAGAAAAGGTGTACG--GCT 259
BSNT_03706___ 256 TC--AGCTGTTGAAAAGGAAATAAAGAAGATTATTGATGTTTTTCCGTTT 303
.| |.|.|||.|..|.|||||..||||.||.|..|||||.|||||||||
RBAM_023160__ 260 CCCAATCGGTTTATGAAGAAATTGAGAAAATAACGGATGTCTTTCCGTTT 309
BSNT_03706___ 304 GTCTCATGCCGGGAAATTGGCCGTTCTGTACTCGGCAGGCC----TATCT 349
|||.|.|||||..||||.|||.||||.|||.|.||.|.||| |||
RBAM_023160__ 310 GTCACGTGCCGTAAAATCGGCAGTTCCGTATTGGGAAAGCCGCTTTAT-- 357
BSNT_03706___ 350 GGGAGCTGAAGGCTGGTGGGGAGCATGCCGTAAAAAAGGTCCATATGAAC 399
||||||||....||||.|||....||.|.||.|||.||||||.|.|||
RBAM_023160__ 358 --GAGCTGAAAATAGGTGCGGATACGGCTGAAAGAAAAGTCCATGTAAAC 405
BSNT_03706___ 400 GCGTCATTTCATGCGAATGAGTGGATTACAACGTCTGTCCTGCTAAAATG 449
||.|||||||||||.|||||.|||||.||.||.||.|||..|||.|||||
RBAM_023160__ 406 GCCTCATTTCATGCCAATGAATGGATCACCACCTCGGTCGCGCTTAAATG 455
BSNT_03706___ 450 GTTGAAGGAATACTGTATGTCATTATGCTGCAATT-----CGCCTTT--- 491
||..||.|||||.||...|.|||||||| |.||.| || |||
RBAM_023160__ 456 GTGTAAAGAATATTGCGCGGCATTATGC-GAAAATAAAACCG--TTTTCG 502
BSNT_03706___ 492 ----CTTTG-GCTTTTCTCCCATAAAGCTGTTTAACAGC---ACATCCTT 533
||.|| |||| .|||.| || |||| |||||.||
RBAM_023160__ 503 GGCACTCTGCGCTT------GATATA-----TT--CAGCCTGACATCATT 539
BSNT_03706___ 534 ATCCCTCGTTCCTCTTGTCAATCCGGATGGCGTTGATCTTGT--TTTAAA 581
.||..|||||||.||.||.|||||.||.||.||||||||.|| ||| |
RBAM_023160__ 540 GTCATTCGTTCCGCTCGTAAATCCCGACGGTGTTGATCTCGTACTTT--A 587
BSNT_03706___ 582 CGGATCAGAAG--TCATGGGAGCCAG-AAGAGATGA-------GCTCGAA 621
|||||..|||| |.|| ||| ||.|.|||| ..||||
RBAM_023160__ 588 CGGATGTGAAGATTTAT------CAGAAAAAAATGAATTTCTTAATCGA- 630
BSNT_03706___ 622 AGGCTAAATGAACATCGTCCGAATTTTAATGAATGGAAGGCGAATATAAA 671
.||||||||||.||.|||.||||....||||||||||||||||||||
RBAM_023160__ 631 ---TTAAATGAACACCGCCCGGATTTCCGCGAATGGAAGGCGAATATAAA 677
BSNT_03706___ 672 CGGGGTTGATTTAAATAAACAATTTCCATC--ATTATGGGAAATTGAAAA 719
|||.||.||||||||||||||.||.||||| || |||||.||||||.|
RBAM_023160__ 678 CGGTGTGGATTTAAATAAACATTTCCCATCCAAT--TGGGATATTGAACA 725
BSNT_03706___ 720 ATACCGAAAACCGACAGCACC--CAGCTACCGCGATTTTCCGGGAATCTC 767
....||.|||||||.|||.|| || |||||.|||||||||||.|...|
RBAM_023160__ 726 GAGGCGCAAACCGAAAGCCCCTTCA--TACCGGGATTTTCCGGGGACGGC 773
BSNT_03706___ 768 TCCGCTTACGGAGCCGGAATCTATTGCGATGTACCGGCTGATCACGGAGA 817
.|||||.||.||.|||||..|....||.|||.||||||||||.||||||.
RBAM_023160__ 774 GCCGCTCACTGAACCGGAGGCGCAGGCAATGCACCGGCTGATAACGGAGC 823
BSNT_03706___ 818 ATCCGCCTGACAGACTGCTGGCTCTTCATACTCAAGGAGAAGAAATTTAT 867
|.|||||||||||.|||.|.||.||||||||.||.||||||||.||||||
RBAM_023160__ 824 AGCCGCCTGACAGGCTGATCGCGCTTCATACGCAGGGAGAAGAGATTTAT 873
BSNT_03706___ 868 TGGGGCTATAAAGGCCTTGAGCCTGAGGAATCTGCTGCCG--TCATAAAG 915
|||||.||..||||...|||.||.|||.|||| .|.||| |.||...|
RBAM_023160__ 874 TGGGGATACGAAGGATGTGAACCGGAGCAATC--ATCCCGGATGATTCGG 921
BSNT_03706___ 916 GATTTTGAGGAGTTAAGCGGGAACATTTATAAGGGAGTAAGGGATATAGA 965
||.|||||.|.|.|||||||.|||...|||.|.||.||.|.....||.||
RBAM_023160__ 922 GAGTTTGAAGCGATAAGCGGAAACCGCTATCAAGGCGTTAAAACCATTGA 971
BSNT_03706___ 966 CAGCTATGCTGGATTTCGTGATTGGTTTATTCACCATTATTTTAAGGAAG 1015
||||.||||.||.|||.|.|||||||||||.||.||.|||...||.||.|
RBAM_023160__ 972 CAGCCATGCGGGTTTTAGGGATTGGTTTATACAGCAGTATGGAAAAGAGG 1021
BSNT_03706___ 1016 GGTATACGGTGGAACTTGGAAAAGGCCAAAATCCTTTGCCGTTTCAGCAG 1065
|.|||||..|.||.||.||.||.||..||||.||||||||.|||||.|||
RBAM_023160__ 1022 GCTATACCATTGAGCTCGGGAAGGGAAAAAACCCTTTGCCTTTTCATCAG 1071
BSNT_03706___ 1066 TTTTCACACATATATAACGCCACAAACGGCATCTTGTGGAGGGCG-TTAT 1114
|||.|..|.||.|||.|.||.||..|.||.||.|||||||||.|| ||.|
RBAM_023160__ 1072 TTTGCTGATATTTATCAAGCGACGGAAGGTATTTTGTGGAGGTCGCTTGT 1121
BSNT_03706___ 1115 TTTTTCATGAGTAA 1128
|||||.|
RBAM_023160__ 1122 TTTTTGA------- 1128
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