Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03666 and RBAM_022900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:57
# Commandline: needle
# -asequence dna-align/BSNT_03666___yqhH.1.9828.seq
# -bsequence dna-align/RBAM_022900___yqhH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03666___yqhH-RBAM_022900___yqhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03666___yqhH-RBAM_022900___yqhH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03666___yqhH
# 2: RBAM_022900___yqhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1725
# Identity: 1318/1725 (76.4%)
# Similarity: 1318/1725 (76.4%)
# Gaps: 105/1725 ( 6.1%)
# Score: 5101.5
#
#
#=======================================
BSNT_03666___ 1 ATGAATACAGAAATGATCTACGATGCAAAATGGCCTGAAGAATTTGCTGA 50
||||...||||.||.||.|..||||||||.|||||.|.|||.|||.||||
RBAM_022900__ 1 ATGACAGCAGAGATCATATTTGATGCAAACTGGCCGGGAGAGTTTTCTGA 50
BSNT_03666___ 51 AAGACTGAAAAACGATGGCCCTTGGGCAAACTGGGAACTGTACAAGCTCT 100
..|.|||||||..||.||.||.|||.||||.|||||..|||||||.||.|
RBAM_022900__ 51 GCGGCTGAAAACGGACGGTCCCTGGTCAAATTGGGAGATGTACAAACTGT 100
BSNT_03666___ 101 CTGCAGAAATCCAGAAAACATTAGCAATTCCAGATTTTGAAGGCTTACGG 150
|.||.|||.|||||.|.||..|.||.|||||.||.||||||||.||..||
RBAM_022900__ 101 CGGCTGAAGTCCAGCAGACCCTTGCCATTCCTGAATTTGAAGGGTTGAGG 150
BSNT_03666___ 151 GCTCCTTTATATCTGCC----TTCCTTTACGCCGCTCCCCCACCAGCTTG 196
|||||||||||.||||| ||| ||.|||||.|||||.|||||||
RBAM_022900__ 151 GCTCCTTTATACCTGCCCAATTTC----ACTCCGCTTCCCCATCAGCTTG 196
BSNT_03666___ 197 AAGTGGCGCAAAAAGTGGTTGAAAAAATGAACGGGAAAGCGATTTTAGCA 246
|.||.||.||.|||||.|||||||||||||||||.||.||||||||.||.
RBAM_022900__ 197 AGGTCGCACAGAAAGTCGTTGAAAAAATGAACGGCAAGGCGATTTTGGCT 246
BSNT_03666___ 247 GATGAGGTTGGTCTCGGGAAAACGGTTGAAGCTGGACTGATTCTAAAAGA 296
|||||.||.||.|||||.||||||||.|||||.||.||||||.|||||||
RBAM_022900__ 247 GATGAAGTAGGGCTCGGAAAAACGGTGGAAGCGGGCCTGATTTTAAAAGA 296
BSNT_03666___ 297 ATATATGATTCGCGGGTTAGCAAAAAAAATTTTGATCCTTGTGCCCGCTT 346
||||||||||||||||.|.||.||||||||..||||.||||||||.||.|
RBAM_022900__ 297 ATATATGATTCGCGGGCTGGCCAAAAAAATCCTGATTCTTGTGCCGGCAT 346
BSNT_03666___ 347 CACTTGTGTCACAGTGGGTCAAAGAGCTTCAGGAAAAATTTTTGATTCCG 396
||||.||.||.||||||||.||||||||||||||.||.|||||.||.||.
RBAM_022900__ 347 CACTCGTTTCCCAGTGGGTGAAAGAGCTTCAGGAGAAGTTTTTAATACCC 396
BSNT_03666___ 397 GCTGTTGAACAAAAGAAAAGCTATGTGTGGGAGCAATGCGATATTGTCGT 446
|||||||||||.||||||||||||||||||||.||.||||||||.|||||
RBAM_022900__ 397 GCTGTTGAACAGAAGAAAAGCTATGTGTGGGAACAGTGCGATATCGTCGT 446
BSNT_03666___ 447 CTCATCAATAGACACCGCGAAGCGCTCGCCCCATCGAGAAATCGTTCTGT 496
.||.||.||.||.||.||.||.||||||||.||...|||.||.||.||.|
RBAM_022900__ 447 TTCTTCTATTGATACGGCCAAACGCTCGCCTCACAAAGACATTGTCCTTT 496
BSNT_03666___ 497 CTATCCCATATGATCTTGTCATTATTGATGAGGCACACAAACTGAAAAAT 546
||||.||.||||||||.|||||||||||.|||||.|||||.||.|||||.
RBAM_022900__ 497 CTATTCCGTATGATCTCGTCATTATTGACGAGGCGCACAAGCTCAAAAAC 546
BSNT_03666___ 547 AGCAAAACGAAGAACTATGAATTTGTCCG-GAA-TCTCGTAAAAAAATAT 594
|||||||||||.||.|||||||||| || ||| |||.||.||.|||||.
RBAM_022900__ 547 AGCAAAACGAAAAATTATGAATTTG--CGAGAAGTCTTGTGAAGAAATAC 594
BSNT_03666___ 595 TGCCTGCTTCTTACCGCGACGCCAATCCAGAACCGTATCGAAGAGATTTT 644
|||||||||.|.||.||||||||.||.||.|||||.||||||||.||.||
RBAM_022900__ 595 TGCCTGCTTTTGACGGCGACGCCGATTCAAAACCGGATCGAAGAAATCTT 644
BSNT_03666___ 645 CAATTTGGTGTCCTTATTAAAACCCGGCCATTTAGGCAGTCAGAATCACT 694
.|||||.|||||..|.|||||.||||||||||||||.|
RBAM_022900__ 645 TAATTTAGTGTCACTGTTAAAGCCCGGCCATTTAGGAA------------ 682
BSNT_03666___ 695 TTCAGGA----GGAGTTCGCCAAGAAGAAATC------CAG--------- 725
|.|| |||.||| ||||||.| |||
RBAM_022900__ 683 ---ACGAAAGCGGATTTC------AAGAAACCTTCAATCAGAAGGACGGG 723
BSNT_03666___ 726 -TTTAGAAGCGCATGAACATTTAAAAGATCTTGTGAATAAAGTCATGATC 774
|| ||.||.|||||.|||||.|||||.||.||.||||||||.||||||
RBAM_022900__ 724 ATT--GACGCTCATGAGCATTTGAAAGAGCTCGTCAATAAAGTGATGATC 771
BSNT_03666___ 775 CGTAACAGGCGGCATGATACCGGGCTGAATTGGAAACAGCGCCATGTTGA 824
||.||||.||||...||.|||||.||.|..||||...|||||||.||.||
RBAM_022900__ 772 CGCAACACGCGGAGCGACACCGGCCTTACATGGACGAAGCGCCACGTGGA 821
BSNT_03666___ 825 AACAGTGCCGATTGAATTTTCTCCATCAGAGCAGGCGCTTTATGATGAAA 874
||||||||||||....|||||.||..|.||.|||||||||||.|||||.|
RBAM_022900__ 822 AACAGTGCCGATCACCTTTTCACCGACGGAACAGGCGCTTTACGATGACA 871
BSNT_03666___ 875 TTTCTCGT----TTGAA---------GGAAAGTATCAATAAACCAGCCAG 911
|||| .|||| ||||| ||||.|
RBAM_022900__ 872 ----TCGTCGCACTGAAAAACGGCACGGAAA-------------AGCCCG 904
BSNT_03666___ 912 CATG----TTCTCGATTATGACCTTGCAAAGAGAATGCTGTTCGAGCAGA 957
||.| ||.||.||||||||..|||||||||||||||||||.|||||.
RBAM_022900__ 905 CAAGCGCATTTTCCATTATGACGCTGCAAAGAGAATGCTGTTCAAGCAGG 954
BSNT_03666___ 958 GAAGCGGTGTATATGACGCTGAAAAAGATGCTTGATCAAAAAGAGAAACA 1007
|||||.||||||||||||||.|||||.||||||||.||||||||.|||||
RBAM_022900__ 955 GAAGCCGTGTATATGACGCTCAAAAAAATGCTTGACCAAAAAGACAAACA 1004
BSNT_03666___ 1008 AGCACCTGCCATT-GATGAGGATACGATTTCAGTTTTAATAGATCGAATT 1056
|||.||.| |||| |||||..|.|||||..|...||||||.||.||.||.
RBAM_022900__ 1005 AGCGCCCG-CATTCGATGATCAGACGATCGCTAATTTAATGGACCGCATC 1053
BSNT_03666___ 1057 AATCAAGTGACACAAAACTCTAAAGCGCTTCAAGTTGTTGATTTGATCAA 1106
||||||||.||.||||||||.||||||.|||||||||||||.||||||.|
RBAM_022900__ 1054 AATCAAGTCACGCAAAACTCAAAAGCGATTCAAGTTGTTGACTTGATCCA 1103
BSNT_03666___ 1107 AAAGATCGACGATAAGGTCATCATTTTTACAGAATACCGTGCAACTCAGA 1156
||||||..|.|||||.|||||.||||||||.||||||.|.||.||.||||
RBAM_022900__ 1104 AAAGATTAATGATAAAGTCATTATTTTTACTGAATACAGGGCGACACAGA 1153
BSNT_03666___ 1157 TTTATCTGCAGTGGTTTCTTCAGCAAAACGGCATCAGTTCTGTGCCGTTT 1206
||||.|||||.|||||.||||||||.||||||||.||.||.||.|||||.
RBAM_022900__ 1154 TTTACCTGCAATGGTTCCTTCAGCAGAACGGCATAAGCTCCGTTCCGTTC 1203
BSNT_03666___ 1207 AGAGGCGGATTTAAACGTGGGAAAAAAGACTGGATGAAGGATCTTTTCCG 1256
|||||||||||||||||.||.|||||||||||||||||||||||.|||||
RBAM_022900__ 1204 AGAGGCGGATTTAAACGCGGAAAAAAAGACTGGATGAAGGATCTCTTCCG 1253
BSNT_03666___ 1257 CGGAAAAATCCAAGTCCTTATTGCAACTGAAGCAGGCGGTGAGGGAATTA 1306
|||.|||.|.||.||.||.||.||.||.|||||.||.||.||.||.||.|
RBAM_022900__ 1254 CGGCAAAGTGCAGGTGCTGATCGCTACAGAAGCCGGAGGCGAAGGGATCA 1303
BSNT_03666___ 1307 ACCTGCAATTTTGCAATCACATGATCAACTATGACCTGCCATGGAATCCG 1356
||||||||||.|||||.||.||.|||||.||||||||.||.|||||.|||
RBAM_022900__ 1304 ACCTGCAATTCTGCAACCATATTATCAATTATGACCTCCCGTGGAACCCG 1353
BSNT_03666___ 1357 ATGCGACTTGAGCAAAGAATCGGAAGAATTCACAGACTCGGGCAGGAGCG 1406
|||||.|||||.||||||||||||||.|||||||||||.||.|||||..|
RBAM_022900__ 1354 ATGCGGCTTGAACAAAGAATCGGAAGGATTCACAGACTAGGTCAGGAAAG 1403
BSNT_03666___ 1407 TGACGTGCACATTTATAACATGGCAACAAAACATACGGTGGAAGAGCATA 1456
.||.||.||.||.||.||.|||||.|||||||||||||||||||||||||
RBAM_022900__ 1404 AGATGTCCATATCTACAATATGGCGACAAAACATACGGTGGAAGAGCATA 1453
BSNT_03666___ 1457 TTCTAAAGCTTTTATATGAAAAAATTCATTTGTTTGAAAAAGTGGTCGGC 1506
||.||||.|||.|.|||||.|||||||||||.||||||||.||.|||||.
RBAM_022900__ 1454 TTTTAAAACTTCTGTATGACAAAATTCATTTATTTGAAAATGTCGTCGGA 1503
BSNT_03666___ 1507 GAACTTGATGATATTTTAACGAAAATTCAAGTGAACAATTTTGAAGAGCA 1556
|||.|.|||||.||.|||||.|||||..||||||.||||||||||||.||
RBAM_022900__ 1504 GAATTAGATGACATCTTAACAAAAATCAAAGTGAGCAATTTTGAAGACCA 1553
BSNT_03666___ 1557 CCTTCATGACATTTTGTATCACTCAGC-AACAGAAGAAGAAATGAAAATA 1605
..|.|||||.|||||.|..||.|| || .|||||.||||||||||.|||.
RBAM_022900__ 1554 TTTGCATGATATTTTATGCCATTC-GCTGACAGAGGAAGAAATGAGAATC 1602
BSNT_03666___ 1606 AAAATGGATAACTTAACCTCATTTTTGTCTTA---TA---AAAAACAGCA 1649
||||||||.||..|.|||||.|||.||||.|| || ||||.| |.
RBAM_022900__ 1603 AAAATGGACAATCTCACCTCTTTTCTGTCGTACGGTACGGAAAATC--CC 1650
BSNT_03666___ 1650 GCCTGCTGAAAAAAGAGGATCTTAG 1674
|||.| |||||.|||||||||.
RBAM_022900__ 1651 GCCAG----AAAAAAAGGATCTTAA 1671
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