Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03552 and RBAM_022190

See Amino acid alignment / Visit BSNT_03552 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03552___yqzJ.1.9828.seq
#    -bsequence dna-align/RBAM_022190___yqzJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03552___yqzJ-RBAM_022190___yqzJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03552___yqzJ-RBAM_022190___yqzJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03552___yqzJ
# 2: RBAM_022190___yqzJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     237/298 (79.5%)
# Similarity:   237/298 (79.5%)
# Gaps:          17/298 ( 5.7%)
# Score: 989.0
# 
#
#=======================================

BSNT_03552___      1 ATGGATGTGATGACAATGTTTGTGGAATCGATAAATGACGTTTTATTCTT     50
                                    |||.||.|.||.||.||.||||||.|||||||.||
RBAM_022190__      1 ---------------ATGATTCTTGAGTCAATGAATGACTTTTTATTTTT     35

BSNT_03552___     51 AGTCGATTTTTTCACAATTATTCTTCCTGCTCTAACGGCAATCGGGATTG    100
                     |||||||||||||||||||||||||||.|||||.||.||.|||||.||.|
RBAM_022190__     36 AGTCGATTTTTTCACAATTATTCTTCCCGCTCTGACCGCGATCGGCATCG     85

BSNT_03552___    101 CATTTCTCTTACGGGAGTGCCGTGTGGGCGAGCAATGGAAATCAAAACGA    150
                     |.|||||.||.||.|||.||||.|..||||||||.||||.|.|.||||||
RBAM_022190__     86 CTTTTCTTTTGCGTGAGCGCCGCGCAGGCGAGCATTGGAGAACGAAACGA    135

BSNT_03552___    151 ACAGATGAACATCAGACGGTCTTTCACATTAACCGAACAGACTTTCTTAT    200
                     |.||||||||||||..|.|||.||||..|.||||||||||||||||||||
RBAM_022190__    136 ATAGATGAACATCAAGCAGTCGTTCAGCTGAACCGAACAGACTTTCTTAT    185

BSNT_03552___    201 TATTATATATCATCGCATTACAACTTGGATACGTAAAGTCTTCCGCATGA    250
                     ||||||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_022190__    186 TATTATATATCATCGCATTACAACTTGGATACGTAAAGTCATCCGCATGA    235

BSNT_03552___    251 ATTCGCCTGTGAACGATGAGGAAGACG-CCGGTTCTCTTCTTTTATAA    297
                     ||||.||.|.|||.|||||.|||||.| |.|.||| ||.|||||||||
RBAM_022190__    236 ATTCACCGGCGAATGATGATGAAGATGTCAGCTTC-CTCCTTTTATAA    282


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