Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03549 and RBAM_022160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_03549___zwf.1.9828.seq
# -bsequence dna-align/RBAM_022160___zwf.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03549___zwf-RBAM_022160___zwf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03549___zwf-RBAM_022160___zwf.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03549___zwf
# 2: RBAM_022160___zwf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1488
# Identity: 1187/1488 (79.8%)
# Similarity: 1187/1488 (79.8%)
# Gaps: 36/1488 ( 2.4%)
# Score: 4695.5
#
#
#=======================================
BSNT_03549___ 1 GTGAAAACAAACCAACAACCAAAAGCAGTAATTGTCATATTCGGTGCAAC 50
||||||||||||.|..|||||||||||||||||||.|||||.|||||.||
RBAM_022160__ 1 GTGAAAACAAACGACAAACCAAAAGCAGTAATTGTAATATTTGGTGCCAC 50
BSNT_03549___ 51 TGGAGATTTAGCAAAACGAAAATTGTATCCGTCTATTCACCGTTTATATC 100
.||.|||||.||||||||||||.|.||.||.||.|||||||||||||||.
RBAM_022160__ 51 AGGGGATTTGGCAAAACGAAAACTTTACCCATCCATTCACCGTTTATATA 100
BSNT_03549___ 101 AAAACGGACAAATCGGAGAAGAGTTTGCAGTGGTAGGAGTTGGAAGAAGA 150
||||.||.|||||.||.||||||||||||||.|||||.||||||||||||
RBAM_022160__ 101 AAAATGGTCAAATTGGTGAAGAGTTTGCAGTTGTAGGTGTTGGAAGAAGA 150
BSNT_03549___ 151 CCTTGGTCTAATGAGGATCTTCGCCAAACTGTTAAAACATCCATTTCCTC 200
||||||||.||.|||||.||.||..||||.||||||||.||..|| ||
RBAM_022160__ 151 CCTTGGTCAAACGAGGACCTCCGGGAAACCGTTAAAACGTCTGTT---TC 197
BSNT_03549___ 201 ATCTGCAG----ATAAGCATATAGATGATTTCACGTCTCATTTTTACTAT 246
.|||||.| |.||| |.|||||.||||||||.|||||||||||.||.
RBAM_022160__ 198 TTCTGCCGGGCAAAAAG-ACATAGACGATTTCACATCTCATTTTTATTAC 246
BSNT_03549___ 247 CACCCGTTTGACGTGACAAACCCTGGTTCTTATCAAGAGCTAAACGTATT 296
||.||||||||.||.||.||.||.|||||.|||||.|||||.||.||..|
RBAM_022160__ 247 CATCCGTTTGATGTAACGAATCCGGGTTCCTATCAGGAGCTGAATGTCCT 296
BSNT_03549___ 297 GCTTAACCAGCTGGAAGATACATATCAAATTCCTAACAACAGAATGTTCT 346
||||.|.|||||.|||.||||||||.||||.||.||||||||||||||.|
RBAM_022160__ 297 GCTTGATCAGCTTGAACATACATATGAAATCCCGAACAACAGAATGTTTT 346
BSNT_03549___ 347 ACTTGGCAATGGCTCCTGAATTCTTCGGAACGATTGCAAAAACA-TTAAA 395
|||||||.|||||||||||.||.|||||.||.||.||||||.|| |||||
RBAM_022160__ 347 ACTTGGCGATGGCTCCTGAGTTTTTCGGCACTATCGCAAAATCACTTAAA 396
BSNT_03549___ 396 ATCAGAGGGTGTAACAGCTACAACCGGCTGGTCCCGCCTTGTCATCGAAA 445
|.| ||.|||||.|||||.||||..|||||||||||.||.|||||.||||
RBAM_022160__ 397 AAC-GAAGGTGTCACAGCGACAAATGGCTGGTCCCGTCTCGTCATTGAAA 445
BSNT_03549___ 446 AACCATTCGGCCATGATCTGCCAAGCGC-ACAG-GCATTAAATAAAGAAA 493
||||.|||||||||||.|||||.||.|| |.|| || |.||.|||||||
RBAM_022160__ 446 AACCGTTCGGCCATGACCTGCCGAGTGCGAAAGAGC--TTAACAAAGAAA 493
BSNT_03549___ 494 TCCGCGAAGCATTTACGGAAGATCAAATTTACAGAATCGACCATTATCTA 543
|.||||||||.||.||||||||||||||||||.|.|||||||||||..||
RBAM_022160__ 494 TACGCGAAGCTTTCACGGAAGATCAAATTTACCGGATCGACCATTACTTA 543
BSNT_03549___ 544 GGCAAACAAATGGTTCAGAACATTGAAGTGATTCGATTTGCCAATGCGAT 593
||.||||||||||||||.||.||.|||||.||.||.|||||.||||||.|
RBAM_022160__ 544 GGTAAACAAATGGTTCAAAATATCGAAGTCATCCGGTTTGCGAATGCGCT 593
BSNT_03549___ 594 TTTCGAACCGCTTTGGACAAACCGCTACATTTCAAACATTCAAATCACAT 643
.||.||.|||||.||||..|||||||||||.||||||||.||.||.||.|
RBAM_022160__ 594 GTTTGAGCCGCTGTGGAATAACCGCTACATCTCAAACATCCAGATTACGT 643
BSNT_03549___ 644 CTAGCGA--ATCACTAGGCGTTGAAGACCGCGCAAGATATTACGAAAAAT 691
|.||.|| || ||.||||||||.||.||.||.|||||||||||.||||
RBAM_022160__ 644 CAAGTGAGGAT--CTCGGCGTTGAGGATCGTGCGAGATATTACGAGAAAT 691
BSNT_03549___ 692 CAGGCGCCCTTCGCGACATGGTGCAAAACCATATTATGCAGATGGTTGCC 741
||||.||.||.||.||||||||.||||||||||||.|.||.|||||.||.
RBAM_022160__ 692 CAGGTGCACTCCGTGACATGGTTCAAAACCATATTTTACAAATGGTCGCT 741
BSNT_03549___ 742 CTTCTT-GCAATGGAGCCGCCTATCAAATTGAACACAGAAGAAATCCGCA 790
| |||| ||.|||||.|||||.||.|||.|||||||.|||||||||||||
RBAM_022160__ 742 C-TCTTGGCGATGGAACCGCCGATTAAACTGAACACGGAAGAAATCCGCA 790
BSNT_03549___ 791 GCGAAAAAGTGAAGGTGCTGAGAGCACTGCGTCCTATTGCAAAAGACGAA 840
|||||||||||||||||||||||||.||.||.|||.|.||...|.|||||
RBAM_022160__ 791 GCGAAAAAGTGAAGGTGCTGAGAGCTCTCCGCCCTGTCGCTCCAAACGAA 840
BSNT_03549___ 841 GTGGATGAATACTTTGTGCGCGGACAATATCAAGCTGGTGAA--ATTGAC 888
|||..|||.|.|||.||.|||||||||||.||||| |.||| ||||||
RBAM_022160__ 841 GTGAGTGACTTCTTCGTCCGCGGACAATACCAAGC--GGGAACGATTGAC 888
BSNT_03549___ 889 GG------TGTACCGGTTCCTGCTTATACAGATGAAGATAATGTCGCTCC 932
|| ||||||| .|| ||||||||||||.|.|||||.||.||
RBAM_022160__ 889 GGAAACGCTGTACCG-----AGC-TATACAGATGAACAAAATGTAGCACC 932
BSNT_03549___ 933 TGACTCCAATACAGAAACCTTTGTTGCCGGCAAGCTCCTGATCGACAACT 982
.||.||||||||.|||||.||.||..||||.|||||..|.|||||.||||
RBAM_022160__ 933 GGATTCCAATACGGAAACATTCGTGTCCGGAAAGCTGTTAATCGATAACT 982
BSNT_03549___ 983 TCAGATGGGCTGGTGTTCCATTCTACATCAGAACCGGAAAACGAATGAAA 1032
||.|.|||||.||.|||||.||.||.|||.|.||.||.|||||.||||||
RBAM_022160__ 983 TCCGCTGGGCCGGCGTTCCGTTTTATATCCGCACAGGGAAACGGATGAAA 1032
BSNT_03549___ 1033 GAAAAGTCCACAAAAATTGTCGTTCAATTTAAGGACATTCCGATGAACCT 1082
|||||.||.||.|||||.||||||||||||||.|||||||||||||||||
RBAM_022160__ 1033 GAAAAATCAACGAAAATCGTCGTTCAATTTAAAGACATTCCGATGAACCT 1082
BSNT_03549___ 1083 GTACTACGGTAATGAAAACAACATGAATCCGAACTTGCTTGTCATTCATA 1132
.||.|||||.|||||||..||..|.|||||||||.||||||||||.||||
RBAM_022160__ 1083 TTATTACGGCAATGAAACGAATGTAAATCCGAACCTGCTTGTCATCCATA 1132
BSNT_03549___ 1133 TTCAGCCTGACGAAGGCATTACGCTTTACTTAAATGCTAAAAAGCTTGGC 1182
|||||||.||.||||||||.||.||.||..|.||.||||||||..|.|||
RBAM_022160__ 1133 TTCAGCCGGATGAAGGCATCACACTATATCTGAACGCTAAAAAATTAGGC 1182
BSNT_03549___ 1183 GGAGCAGCACACGCACAGCCAATCAAACTCGATTATTGCAGCAATTGCAA 1232
|||||.||.||.||.|||||.||.||.||.|||||.||||||||.||||.
RBAM_022160__ 1183 GGAGCCGCTCATGCTCAGCCGATTAAGCTGGATTACTGCAGCAACTGCAG 1232
BSNT_03549___ 1233 TGACGAGTTGAACACCCCTGAAGCATATGAAAAACTCATTCACGACTGTC 1282
||||||..|||||||.||.|||||.|||||||||.|.||.||.|||||||
RBAM_022160__ 1233 TGACGAAATGAACACACCGGAAGCCTATGAAAAATTAATCCATGACTGTC 1282
BSNT_03549___ 1283 TTCTTGGCGATGCAACAAACTTTGCACACTGGGATGAAGTTGCCCTTTCT 1332
|.||.||.|||||.|||||||||||.||.|||||.|||||.||.|||||.
RBAM_022160__ 1283 TGCTCGGTGATGCGACAAACTTTGCCCATTGGGACGAAGTGGCGCTTTCC 1332
BSNT_03549___ 1333 TGGAGCTTTGTCGACTCTATTTCTGAAACATGGGCAGCAAACAAAACCTT 1382
||||..||.|||||..|.|||||.|||||.||||||||..||||||||.|
RBAM_022160__ 1333 TGGAATTTCGTCGATGCGATTTCCGAAACGTGGGCAGCCGACAAAACCCT 1382
BSNT_03549___ 1383 ATCTCCTAACTACGAATCAGGCTCAATGGGACCGAAAGTATCTGATGATC 1432
.|||||.||.||.|||.|.||.||||||||||||||||..||.||.||||
RBAM_022160__ 1383 TTCTCCGAATTATGAAGCCGGGTCAATGGGACCGAAAGCTTCGGACGATC 1432
BSNT_03549___ 1433 TTTTGGCGAAAGACGGCTTACACTGGTGGAATATATAA 1470
||.|.|..||||||||..|.||||||||||||||||||
RBAM_022160__ 1433 TTCTTGAAAAAGACGGTCTCCACTGGTGGAATATATAA 1470
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