Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03433 and RBAM_021220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03433___serA.1.9828.seq
# -bsequence dna-align/RBAM_021220___serA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03433___serA-RBAM_021220___serA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03433___serA-RBAM_021220___serA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03433___serA
# 2: RBAM_021220___serA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1586
# Identity: 1298/1586 (81.8%)
# Similarity: 1298/1586 (81.8%)
# Gaps: 16/1586 ( 1.0%)
# Score: 5308.5
#
#
#=======================================
BSNT_03433___ 1 ATGTTTCGAGTATTGGTCTCAGACAAAATGAGCAACGACGGTTTACAGCC 50
|||||||||||.|||||||||||.||.||||||||.|||||.|||.||||
RBAM_021220__ 1 ATGTTTCGAGTTTTGGTCTCAGATAAGATGAGCAATGACGGCTTAAAGCC 50
BSNT_03433___ 51 ACTTATTGAATCAGACTTTATTGAAATCGTTCAAAAAAACGTAGCAGATG 100
.||.||.||||||||||||||.|||||.||||||||||||||.||.||||
RBAM_021220__ 51 GCTGATGGAATCAGACTTTATAGAAATTGTTCAAAAAAACGTCGCGGATG 100
BSNT_03433___ 101 CAGAAGATGAATTACATACTTTTGATGCTCTTTTGGTGCGAAGTGCGACA 150
|||||||||||||||||||.||||||||.||.||.||.||.|||||.||.
RBAM_021220__ 101 CAGAAGATGAATTACATACCTTTGATGCCCTGTTAGTCCGCAGTGCCACG 150
BSNT_03433___ 151 AAAGTAACAGAAGACCTTTTCAACAAAATGACTTCTTTAAAAATTGTCGG 200
||||||||.|||||..|.||.||.||||||||.|||||||||||.|||||
RBAM_021220__ 151 AAAGTAACCGAAGAATTGTTTAAAAAAATGACCTCTTTAAAAATCGTCGG 200
BSNT_03433___ 201 AAGAGCCGGTGTCGGTGTCGATAATATCGATATTGATGAGGCTACGAAAC 250
.||||||||||||||.||.||.||.|||||.|||||||||||.||.||||
RBAM_021220__ 201 CAGAGCCGGTGTCGGCGTAGACAACATCGACATTGATGAGGCCACAAAAC 250
BSNT_03433___ 251 ACGGGGTAATCGTGATCAATGCTCCGAACGGCAACACCATTTCGACAGCT 300
|.|||||.||||||||.||.||.|||||.||.|||||||||||.||.||.
RBAM_021220__ 251 ATGGGGTTATCGTGATAAACGCGCCGAATGGAAACACCATTTCAACGGCA 300
BSNT_03433___ 301 GAGCATACATTTGCAATGATATCTTCTTTAATGAGACACATTCCGCAGGC 350
|||||||||||.||.|||||.|||||.||||||||||||||||||||.||
RBAM_021220__ 301 GAGCATACATTCGCGATGATTTCTTCATTAATGAGACACATTCCGCAAGC 350
BSNT_03433___ 351 TAATATCTCAGTGAAATCCAGAGAGTGGAACCGCACAGCTTATGTCGGTT 400
.|||||||||||.|||||.|||||.||||||||.||.||||.||||||..
RBAM_021220__ 351 CAATATCTCAGTAAAATCAAGAGAATGGAACCGGACGGCTTTTGTCGGGG 400
BSNT_03433___ 401 CAGAGCTTTATGGAAAAACGCTTGGTATTGTAGGATTAGGCCGAATCGGA 450
|.|||||.||.|||||.||..|.||.|||||.||..|.|||||.||||||
RBAM_021220__ 401 CGGAGCTCTACGGAAAGACTTTAGGCATTGTCGGTCTGGGCCGGATCGGA 450
BSNT_03433___ 451 AGTGAAATTGCACAGCGTGCGAGAGCATTCGGTATGACTGTGCACGTTTT 500
||.||.|||||.|||||.||.|||||.|||||||||||.||.||.||.||
RBAM_021220__ 451 AGCGAGATTGCCCAGCGCGCCAGAGCGTTCGGTATGACGGTTCATGTATT 500
BSNT_03433___ 501 TGATCCTTTCTTAACGGAAGAAAGAGCGAAAAAAATCGGCGTAAACAGCC 550
.||||||||||||||.|||||.|||||....|||||||||||||||||||
RBAM_021220__ 501 CGATCCTTTCTTAACCGAAGAGAGAGCCGGCAAAATCGGCGTAAACAGCC 550
BSNT_03433___ 551 GTACATTTGAAGAAGTGCTTGAAAGTGCGGATATCATTACCGTTCACACG 600
|.|||||.|||||||||||||||||.|||||||||||||||||.||||||
RBAM_021220__ 551 GGACATTCGAAGAAGTGCTTGAAAGCGCGGATATCATTACCGTCCACACG 600
BSNT_03433___ 601 CCTTTAACAAAAGAAACAAAAGG-CTTATTGAATAAAGAAACGATTGCAA 649
|||||||||||.||||||||||| ||..|| ||.|.||||||.|||||.|
RBAM_021220__ 601 CCTTTAACAAAGGAAACAAAAGGACTGCTT-AACAGAGAAACCATTGCCA 649
BSNT_03433___ 650 AAACGAAAAAAGGCGTTCG-CTTAATTAACTGTGCGCGAGGCGGAATTAT 698
||||||||||||||||.|| ||| ||.|||||.||..|||||||.|||||
RBAM_021220__ 650 AAACGAAAAAAGGCGTCCGTCTT-ATCAACTGCGCAAGAGGCGGCATTAT 698
BSNT_03433___ 699 CGATGAAGCAGCACTTCTCGAAGCTTTGGAAAACGGGCATGTTGCGGGAG 748
.||||||||.||.|||.|.|||||..||||||.|||.|||||.||.||.|
RBAM_021220__ 699 TGATGAAGCGGCGCTTTTGGAAGCGCTGGAAAGCGGCCATGTCGCAGGCG 748
BSNT_03433___ 749 CGGCGCTTGACGTTTTCGAAGTTGAACCGCCAGTTGACAAT--AAACTTG 796
|.||.||||||||.||.|||||.||||||||||||| ||| ||.|||.
RBAM_021220__ 749 CTGCCCTTGACGTGTTTGAAGTGGAACCGCCAGTTG--AATCAAAGCTTC 796
BSNT_03433___ 797 TTGATCATCCATTAGTCATTGCCACTCCTCACTTGGGAGCATCAACGAAA 846
..||.||.||..|.||.||.|||||.||||||||.||.||.|||||||||
RBAM_021220__ 797 CCGACCACCCGCTGGTGATCGCCACACCTCACTTAGGCGCTTCAACGAAA 846
BSNT_03433___ 847 GAAGCACAGCTCAATGTCGCCGCCCAAGTGTCAGAAGAAGTTCTGCAGTT 896
|||||||||||.||||||||.||.||.||.||.||||||||.||||||||
RBAM_021220__ 847 GAAGCACAGCTGAATGTCGCGGCACAGGTTTCTGAAGAAGTGCTGCAGTT 896
BSNT_03433___ 897 CGCAAAAGGCCTGCCTGTCATGTCAGCTATCAACCTGCCTGCCATGACAA 946
.||||||||.|||||||||||||||||.|||||.||||||||.|||||||
RBAM_021220__ 897 TGCAAAAGGTCTGCCTGTCATGTCAGCGATCAATCTGCCTGCGATGACAA 946
BSNT_03433___ 947 AGGATGAATTTGCTAAAATTAAACCCTACCATCAAATTGCAGGAAAAATT 996
|.||||||||....|||||..|.||.||.||.||||||||.|..|||||.
RBAM_021220__ 947 AAGATGAATTCAAAAAAATCCAGCCTTATCACCAAATTGCTGATAAAATC 996
BSNT_03433___ 997 GGCAGCCTTGTATCACAGTGCATGAAAGAACCAGTACAGGATGTTGCCAT 1046
||.||.||.||||||||.||.|||||.|||||.||..|.||||||||.||
RBAM_021220__ 997 GGAAGTCTCGTATCACAATGTATGAAGGAACCCGTCAAAGATGTTGCGAT 1046
BSNT_03433___ 1047 TCAATATGAAGGCACAATTGCTAAACTTGAAACATCGTTCATTACAAAAG 1096
|||||||||||||||.||.||.||||||||||||||.||.|||||||||.
RBAM_021220__ 1047 TCAATATGAAGGCACCATCGCCAAACTTGAAACATCATTTATTACAAAAA 1096
BSNT_03433___ 1097 CCCTTCTGTCAGGCTTTTTAAAACCGCGCGTTGACTCTACTGTTAACGAG 1146
.|||.|||||.||.||.|||||||||||.||.|||||.||.||.||.||.
RBAM_021220__ 1097 GCCTGCTGTCCGGTTTCTTAAAACCGCGTGTAGACTCAACGGTCAATGAA 1146
BSNT_03433___ 1147 GTCAATGCCGGGGGTGTCGCAAAAGAACGCGGCATCAGCTTCAGTGAAAA 1196
||.||.|||||.|||||.||||||||||||||.|||||||||||.||.||
RBAM_021220__ 1147 GTGAACGCCGGCGGTGTAGCAAAAGAACGCGGAATCAGCTTCAGCGAGAA 1196
BSNT_03433___ 1197 AATTTCCTCTTCTGAATCTGGATACGATAACTGCATCAGCGTAAAAGTGA 1246
.||||||||...||||||.|||||.|||||||||||||||||||||||.|
RBAM_021220__ 1197 GATTTCCTCCAATGAATCAGGATATGATAACTGCATCAGCGTAAAAGTAA 1246
BSNT_03433___ 1247 CAGGAGACCGCAGCACCTTTACTGTAACGGCTACGTATATTCCTCATTTC 1296
|.||||||||.|||||.|||||..||||||||||||||||.|||||.|||
RBAM_021220__ 1247 CCGGAGACCGGAGCACATTTACGTTAACGGCTACGTATATCCCTCACTTC 1296
BSNT_03433___ 1297 GGAGAACGAATTGTCGAGATCAATGGATTTAATATTGATTTTTATCCGAC 1346
||.||||||||.||.||..|.||.||.|||||||||||.||..||||..|
RBAM_021220__ 1297 GGTGAACGAATCGTTGAACTGAACGGCTTTAATATTGACTTAAATCCTGC 1346
BSNT_03433___ 1347 AGGTCACTTGGTGTATATCCAGCATCAAGATACAACAGGTGTCATCGGCC 1396
.||.|||.|.||.|||||||||||.||.|||||.||.|||||.|||||.|
RBAM_021220__ 1347 CGGCCACCTCGTTTATATCCAGCACCAGGATACGACTGGTGTAATCGGAC 1396
BSNT_03433___ 1397 GAGTAGGACGTATTCTCGGAGATAATGATATTAACATTGCAACCATGCAG 1446
|.||||||||.||.|||||.|||||||||||.||.||.||.|||||||||
RBAM_021220__ 1397 GCGTAGGACGCATCCTCGGCGATAATGATATCAATATCGCTACCATGCAG 1446
BSNT_03433___ 1447 GTTGGCCGTAAGGAAAAAGGCGGAGAAGCCATCATGATGCTTTCCTTTGA 1496
||.||||||||.||||||||||||||||||||.|||||||||||.|||||
RBAM_021220__ 1447 GTAGGCCGTAAAGAAAAAGGCGGAGAAGCCATTATGATGCTTTCTTTTGA 1496
BSNT_03433___ 1497 CAGACATCTGGAAGATAAAATTGTGAAAGA----ACTAACAAATGTCCCT 1542
.|.||||.|.||.||||||.|.||.||.|| ||| .||| |.|..
RBAM_021220__ 1497 TAAACATTTAGATGATAAAGTCGTCAATGAGTTGACT-TCAA---TTCAG 1542
BSNT_03433___ 1543 GATATTGTGTCCGTGAAGCTCATTGATCTGCCATAA 1578
||||||||.|||||.||.||.||||||||.||.|||
RBAM_021220__ 1543 GATATTGTTTCCGTTAAACTGATTGATCTTCCGTAA 1578
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