Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03426 and RBAM_021170
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:39
# Commandline: needle
# -asequence dna-align/BSNT_03426___recQ.1.9828.seq
# -bsequence dna-align/RBAM_021170___recQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03426___recQ-RBAM_021170___recQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03426___recQ-RBAM_021170___recQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03426___recQ
# 2: RBAM_021170___recQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1583
# Identity: 1070/1583 (67.6%)
# Similarity: 1070/1583 (67.6%)
# Gaps: 184/1583 (11.6%)
# Score: 3400.5
#
#
#=======================================
BSNT_03426___ 1 ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTT 50
||||||.|..|.||..||.|.||||...|||.|||||||||...||||||
RBAM_021170__ 1 ATGACTGAGCTGCATAAAGCTTTATCCAAGTATTTTGGTTTGCATTCCTT 50
BSNT_03426___ 51 TAAAAAAGGGCAGCAGGACATTATTGAAAGCATACTCAGCGGG------- 93
|||||||||||||.|.||.||||| .||| ||||.|
RBAM_021170__ 51 TAAAAAAGGGCAGGAAGAGATTAT--------GACT-AGCGTGCTCCAAA 91
BSNT_03426___ 94 --AAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGC 141
||||||||.||.||.|||||.|||||.||.||.||.|||||..|.|||
RBAM_021170__ 92 AAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGC 141
BSNT_03426___ 142 TACCAGCTGCCTGGTTATATGCTTGACGGCATGGT----ATTAATCGTTT 187
||.|||||.||.|||||.|||.|.|||||..|||| |||| |||
RBAM_021170__ 142 TATCAGCTCCCGGGTTACATGATGGACGGGCTGGTGCTGATTA----TTT 187
BSNT_03426___ 188 CTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGG 237
|.||.||.|||||.||||||||.|||||||||||||||||.|||||....
RBAM_021170__ 188 CGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAA 237
BSNT_03426___ 238 GGGGAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAA---CAGGCAGGA 284
||.||||||||.|.|||.||.||.|||||||||||.|| | ||| ||
RBAM_021170__ 238 GGAGAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCC--GCA-GA 284
BSNT_03426___ 285 AAGACAATTTGT-TTTAG-AACATATTCA-TCGATATAAATTTTTGTACT 331
..|.||.|||.| .|.|| |||| ||| .||.|||||||||.|.||..
RBAM_021170__ 285 GCGGCATTTTATCCTCAGCAACA---TCAGCCGGTATAAATTTCTCTATA 331
BSNT_03426___ 332 TGTCTCCTGAAG--CTTTACAGTCTCCATATGTATTGGAAAAA----TTG 375
|||||||||||| |||| ..||.||.|||||..|| || |||
RBAM_021170__ 332 TGTCTCCTGAAGCCCTTT--CTTCACCTTATGTGCTG----AACCGTTTG 375
BSNT_03426___ 376 AAAAGCGTCCCGATCAGCCTATTTGTTATTGACGAAGCGCATTGTATTTC 425
||||..||||||.||||..|||||||||||||.||.||.|||||.||.||
RBAM_021170__ 376 AAAAATGTCCCGGTCAGTTTATTTGTTATTGATGAGGCTCATTGCATATC 425
BSNT_03426___ 426 TGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGA 475
.|||||||||||.||.||||||||||||||.||.||||||||||...|.|
RBAM_021170__ 426 AGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGACCTTTCA 475
BSNT_03426___ 476 GAAAAAAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACA 525
|..|...|||.||..|.|||||.||..||||..|||||||.||.||.|||
RBAM_021170__ 476 GGCAGGCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACA 525
BSNT_03426___ 526 AAGGAAACGCTGCA-AGATGTCATGAACCTGCT-GGAGCTGCAGCATGCT 573
||.|||||||| || |||.||.|.|.|..|||| ||| ||..|||||||.
RBAM_021170__ 526 AAAGAAACGCT-CAGAGACGTGACGGATGTGCTCGGA-CTTGAGCATGCG 573
BSNT_03426___ 574 GTACGCCATCTCAACTCAGTCAACCGCCCAAACA-TCGCACTGAGGGTTG 622
||.||.|||||..|.|||||||||||.||.||.| ||.| |||..||..|
RBAM_021170__ 574 GTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTC-CTGGCGGCAG 622
BSNT_03426___ 623 AAAATGCGGTGGATACTGCCGAAAAAATAGATAGGGTCATTCAGCTGGTT 672
||.||..||.|||||.|||||||||||||...|||.|||...||||.|..
RBAM_021170__ 623 AACATTTGGCGGATAATGCCGAAAAAATAAGCAGGCTCACGGAGCTTGCC 672
BSNT_03426___ 673 GAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGGGC 722
|||||.||..||||.|||||.||..|.|||||||||||..|.||||||||
RBAM_021170__ 673 GAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGGGC 722
BSNT_03426___ 723 CGAGGAATTAGCGGGTGAAATTAA--AAGCAAAACGAG-CAGCAGAGCCG 769
.||.||..|.||||.|||..|.|| || ||||||.| .|||.|| |.|
RBAM_021170__ 723 GGAAGAGCTTGCGGCTGAGCTGAACGAA--AAAACGGGAAAGCGGA-CGG 769
BSNT_03426___ 770 ACTTTTACCATGGCGGTTTGGAGTCAGGGGACCGGATTTTAATTCAGCAG 819
|.|.|||.||.|||||..||||..||||.|||.||||||||||.||||||
RBAM_021170__ 770 ATTATTATCACGGCGGAATGGATACAGGCGACAGGATTTTAATCCAGCAG 819
BSNT_03426___ 820 CAGTTTATTCATAACCAGCTTGATGTG-ATATGTTGTACGAATGCGTTTG 868
||.|||||.||||||||||||||| || ||.||.||.||.||||||||.|
RBAM_021170__ 820 CAATTTATCCATAACCAGCTTGAT-TGCATCTGCTGCACCAATGCGTTCG 868
BSNT_03426___ 869 GAATGGGTGTCGATAAACCCGATATCAGATATGTGATTCA-TTTTCACCT 917
|.||||||||.|||||..|.||||||.|.|.|||.||||| ||||..|||
RBAM_021170__ 869 GCATGGGTGTGGATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCT 918
BSNT_03426___ 918 CCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCGGGCCGTG 967
||| ||.|||||.||.||.||||||||||||||||||||||||||.||.|
RBAM_021170__ 919 CCC-CAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCGGGACGCG 967
BSNT_03426___ 968 ATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAA 1017
|.||.|..|||||||||||.|||||||||.|||||||.||.|||...||.
RBAM_021170__ 968 ACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAG 1017
BSNT_03426___ 1018 TTGCAGGAACAGATTATCCAGATGGAGAG--TGTCACAGCTGAAGAAATC 1065
.|.|||.|.||||||||.||||..||.|| ||| ||||..|
RBAM_021170__ 1018 CTTCAGCAGCAGATTATTCAGACAGAAAGCCTGT-----CTGATTA---- 1058
BSNT_03426___ 1066 GCCGACGTAATCCGTGTCCTAGAA--------------AAGACGG----- 1096
||.|||.||| .|.||||
RBAM_021170__ 1059 --------------TGACCTGGAAGGCATTTTGGCTATCATACGGGATGC 1094
BSNT_03426___ 1097 AGGAGCGG--GATGAGAGAAGGCTGCGTGACGTATTACT--TCAGT-ATG 1141
.||..||| |||||..|||.|||.||.|||| |.|| |||.| |.|
RBAM_021170__ 1095 CGGTACGGGTGATGAACGAAAGCTTCGGGACG---TTCTGATCAATAAAG 1141
BSNT_03426___ 1142 GCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGG 1191
|||||...||.||||||||.||.|.|....|.|||||.|.|.||||.||.
RBAM_021170__ 1142 GCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGA 1191
BSNT_03426___ 1192 AAAACATCAGTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCT 1241
|||||..||...||.|.|.||.||.|||||.|..||||.|||.||||...
RBAM_021170__ 1192 AAAACCACAAAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAA 1241
BSNT_03426___ 1242 GAAGCTG-GAAAAAATGCACCGTGTATCATTTTTGCTTCAGCGTGA---- 1286
||||||| |.|||| ||.|||.||| |||.||||.|
RBAM_021170__ 1242 GAAGCTGCGTAAAA--------TGAATCGTTT----TTCGGCGTTATTAG 1279
BSNT_03426___ 1287 --CGG-----CTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCA 1329
||| .|||.||||..|.||.|||.|..|.||.||.||||||.|.
RBAM_021170__ 1280 AGCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCG 1329
BSNT_03426___ 1330 TACGAGCCTGATG------ACGGA-AACCTCCCGTGCTGTTCA-CA-TTG 1370
||.|||||||||| .|||| || ||||| || || .||
RBAM_021170__ 1330 TATGAGCCTGATGGTCAAACCGGACAA-------TGCTG--CAGCAGCTG 1370
BSNT_03426___ 1371 CGGTTTTGATTT--ATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAAT 1418
|||..|||||.| .||| |||.||.|.||||||.|.|||.|..||.||
RBAM_021170__ 1371 CGGACTTGATCTGGCTCC--GTACGAGCAAAAAGGAGAACGTAAAAATAT 1418
BSNT_03426___ 1419 GGCGC--------CATTAGACAGCTGGAGTTCGGAATTGCACCGGATATT 1460
||..| .|||.|| |||||||.||.|| ||||||.||
RBAM_021170__ 1419 GGAACGGTTTGAAGATTGGA-AGCTGGAATTAGG-------CCGGATTTT 1460
BSNT_03426___ 1461 CAGCTTGCAGA--CTGTAGGTGAGCTGAACTGA 1491
|.|.| |||| |||..||||||.|.|.||||
RBAM_021170__ 1461 CGGAT--CAGAGTCTGCGGGTGAGTTCAGCTGA 1491
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