Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03404 and RBAM_021030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:37
# Commandline: needle
# -asequence dna-align/BSNT_03404___rpsA.1.9828.seq
# -bsequence dna-align/RBAM_021030___rpsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03404___rpsA-RBAM_021030___rpsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03404___rpsA-RBAM_021030___rpsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03404___rpsA
# 2: RBAM_021030___rpsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1152
# Identity: 991/1152 (86.0%)
# Similarity: 991/1152 (86.0%)
# Gaps: 6/1152 ( 0.5%)
# Score: 4313.0
#
#
#=======================================
BSNT_03404___ 1 ATGACAGAGGAAATGAATCAAATTGATGTTCAAGTGCCAGAGGTTGGAGA 50
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_021030__ 1 ATGACAGAGGAAATGAATCAAATTGATGTTCAAGTGCCAGAGGTTGGAGA 50
BSNT_03404___ 51 TGTAGTTAAAGGGATTGTGACAAAGGTAGAAGACAAACATGTAGATGTAG 100
||||||.|||||||||||||||||||||||.|||||.|||||||||||.|
RBAM_021030__ 51 TGTAGTAAAAGGGATTGTGACAAAGGTAGAGGACAAGCATGTAGATGTCG 100
BSNT_03404___ 101 AAATTATCAATGTCAAACAATCCGGTATTATTCCAATCAGTGAATTATCA 150
|||||.|||||||||||||.|||||.||.|||||||||||||||||||||
RBAM_021030__ 101 AAATTGTCAATGTCAAACAGTCCGGAATCATTCCAATCAGTGAATTATCA 150
BSNT_03404___ 151 AGTCTTCATGTAGAGAAAGCATCGGATGTTGTTAAAGTAGACGACGAGCT 200
|||||||||||||||||||||||||||||.||.|||||.|||||||||||
RBAM_021030__ 151 AGTCTTCATGTAGAGAAAGCATCGGATGTCGTAAAAGTTGACGACGAGCT 200
BSNT_03404___ 201 TGACCTGAAAGTAACAAAAGTGGAAGACGATGCTTTGATTTTATCTAAAC 250
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_021030__ 201 TGACCTGAAAGTAACAAAAGTGGAAGACGATGCTTTGATTTTATCTAAAC 250
BSNT_03404___ 251 GTGCTGTTGATGCAGACCGCGCTTGGGAAGACCTTGAGAAAAAATTTGAA 300
||||.||||||||.|||||||||||||||||||||||.||||||||.||.
RBAM_021030__ 251 GTGCCGTTGATGCTGACCGCGCTTGGGAAGACCTTGAAAAAAAATTCGAC 300
BSNT_03404___ 301 ACAAAAGAAGTGTTTGAAGCTGAAGTGAAAGATGTCGTGAAAGGCGGCCT 350
|||||||||||||||||||||||||||||||||||.|||||||||||.||
RBAM_021030__ 301 ACAAAAGAAGTGTTTGAAGCTGAAGTGAAAGATGTGGTGAAAGGCGGTCT 350
BSNT_03404___ 351 TGTCGTTGATATCGGCGTTCGCGGTTTTATTCCGGCATCGCTTGTTGAAG 400
.|||||||||||||||||||||||.||.|||||.|||||.|||||.||||
RBAM_021030__ 351 CGTCGTTGATATCGGCGTTCGCGGCTTCATTCCCGCATCACTTGTCGAAG 400
BSNT_03404___ 401 CACATTTCGTTGAAGACTTCACTGACTATAAAGGAAAAACACTGTCACTG 450
|.||||||||.||.||.|||||||||||||||||.|||||.||.||.||.
RBAM_021030__ 401 CTCATTTCGTCGAGGATTTCACTGACTATAAAGGGAAAACCCTCTCTCTT 450
BSNT_03404___ 451 CTCGTTGTAGAGCTTGACCGTGATAAAAACCGCGTGATCCTTTCACACCG 500
.||||.||.||.||.|||||||||||||||||.|||||.||.||||||||
RBAM_021030__ 451 ATCGTCGTTGAACTCGACCGTGATAAAAACCGGGTGATTCTGTCACACCG 500
BSNT_03404___ 501 TGCTGTTGTTGAAAGTGAACA---AGCGAATAAAAAACAAGAACTTCTTC 547
.|||||.||.||||..||||| ||| .|||||.||.||..||||.|
RBAM_021030__ 501 GGCTGTAGTGGAAAAAGAACAGACAGC---CAAAAAGCATGATTTTCTCC 547
BSNT_03404___ 548 AGTCTCTTGAAGTTGGGAGTGTACTTGATGGCAAAGTACAGCGCCTGACT 597
|..|.|||||.|||||.||.||.|||||.||.|||||.|||||.||||||
RBAM_021030__ 548 AAACGCTTGAGGTTGGAAGCGTGCTTGAAGGAAAAGTGCAGCGTCTGACT 597
BSNT_03404___ 598 GATTTTGGCGCGTTTGTTGATATCGGCGGCATCGACGGACTTGTACACAT 647
|||||.|||||.|||||.||.||||||||.||.|||||.|||||.||.||
RBAM_021030__ 598 GATTTCGGCGCATTTGTCGACATCGGCGGAATTGACGGGCTTGTTCATAT 647
BSNT_03404___ 648 TTCACAGCTTTCCCACTCTCATGTAGAGAAACCGTCTGACGTTGTTGAAG 697
|||.|||||.||.||.||.||.||.||.||||||||||||||.||.||||
RBAM_021030__ 648 TTCGCAGCTGTCTCATTCACACGTCGAAAAACCGTCTGACGTGGTGGAAG 697
BSNT_03404___ 698 AGGGACAAGAAGTAAAAGTGAAAGTGTTATCGGTTGACCGTGACAATGAA 747
|.||.||.||.||||||||||||||..|.||.||.|||||.||.||.|||
RBAM_021030__ 698 AAGGTCAGGACGTAAAAGTGAAAGTACTGTCCGTAGACCGCGATAACGAA 747
BSNT_03404___ 748 CGTATTTCTTTATCAATCAAAGATACACTGCCTGGACCTTGGAGCCAAAT 797
||||||||||||||.||.|||||.||.|||||.||||||||||||||..|
RBAM_021030__ 748 CGTATTTCTTTATCTATTAAAGAAACGCTGCCGGGACCTTGGAGCCAGGT 797
BSNT_03404___ 798 CGGCGAAAAAGTGAAGCCTGGCGATGTGCTTGAAGGAACTGTACAGCGTC 847
|||||||||.||.||.|..||.||||||||||||||||..||.|||||.|
RBAM_021030__ 798 CGGCGAAAAGGTAAAACAGGGAGATGTGCTTGAAGGAAAAGTGCAGCGCC 847
BSNT_03404___ 848 TTGTAAGCTTCGGTGCCTTTGTTGAAATCCTTCCAGGTGTTGAAGGTCTC 897
|||||||||||||.|||||.||||||||.|||||.||.||.|||||.||.
RBAM_021030__ 848 TTGTAAGCTTCGGCGCCTTCGTTGAAATTCTTCCGGGCGTGGAAGGACTT 897
BSNT_03404___ 898 GTTCATATTTCTCAAATTTCCAATAAACACATCGGCACGCCGCATGAAGT 947
||.||.|||||.|||||||||||||||||.|||||.||||||||||||||
RBAM_021030__ 898 GTGCACATTTCGCAAATTTCCAATAAACATATCGGAACGCCGCATGAAGT 947
BSNT_03404___ 948 CCTTGAAGAAGGACAGACTGTAAAAGTGAAGGTTCTTGATGTGAATGAAA 997
.||||||||||||||||||||.||||||||.||.|||||.|||||.||||
RBAM_021030__ 948 GCTTGAAGAAGGACAGACTGTTAAAGTGAAAGTGCTTGACGTGAACGAAA 997
BSNT_03404___ 998 ATGAGGAGCGCATTTCATTAAGCATGCGTGAACTTGAAGAAACGCCTAAA 1047
..||.|||||||||||.||||||||||||||.|||||||||.||||.|||
RBAM_021030__ 998 GCGAAGAGCGCATTTCCTTAAGCATGCGTGAGCTTGAAGAAGCGCCGAAA 1047
BSNT_03404___ 1048 GCTGATCAGGAAGATTACCGTCAATATCAAGCGAAGGAAGAAACAAGCAC 1097
||.||||||||.||.|.|||.|||||.||.|||||.|||||..|.|||||
RBAM_021030__ 1048 GCCGATCAGGAGGACTTCCGCCAATACCAGGCGAAAGAAGAGCCGAGCAC 1097
BSNT_03404___ 1098 TGGCTTCCAGCTTGGAGATCTGATCGGAGATAAGCTGAATAAACTAAAAT 1147
.||||||||||||||.|||.|.||||||||.|||||.||||||.||||||
RBAM_021030__ 1098 CGGCTTCCAGCTTGGCGATTTAATCGGAGACAAGCTTAATAAATTAAAAT 1147
BSNT_03404___ 1148 AA 1149
||
RBAM_021030__ 1148 AA 1149
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