Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03172 and RBAM_019250
See
Amino acid alignment /
Visit
BSNT_03172 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03172___yojE.1.9828.seq
# -bsequence dna-align/RBAM_019250___yojE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03172___yojE-RBAM_019250___yojE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03172___yojE-RBAM_019250___yojE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03172___yojE
# 2: RBAM_019250___yojE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity: 659/940 (70.1%)
# Similarity: 659/940 (70.1%)
# Gaps: 86/940 ( 9.1%)
# Score: 2237.0
#
#
#=======================================
BSNT_03172___ 1 -----ATGCAATATTCAGAAACAAAAAAAGGCGTTATTTACACAGCCGTT 45
|.|.|||| |..|||.||||||..|.|||||.||.||...|
RBAM_019250__ 1 GTGCAAGGGAATA-----ACGCAAGAAAAGGAATCATTTATACCGCTTGT 45
BSNT_03172___ 46 TCCTTTATCATGTGGGGCCTGTTTCCGCTCTATTGGAAGCTTCTCGAACA 95
||.||...|||||||||.|||||||||.||||.|||||.|||||.|||||
RBAM_019250__ 46 TCTTTCGCCATGTGGGGGCTGTTTCCGGTCTACTGGAAACTTCTTGAACA 95
BSNT_03172___ 96 GCTGCCGGCTCTTGATATTTTGGCTCATCGTATTATATGGTCTTTTGTTT 145
..|.||.||..|.||.|||||.|||||.||.|||.|||||||.|||||||
RBAM_019250__ 96 AATACCCGCATTGGACATTTTAGCTCACCGGATTTTATGGTCATTTGTTT 145
BSNT_03172___ 146 TTATGTGTATCGTACTTT----TTTTCTTGCGGCAA-TGGAAAATAGGAT 190
|.|||||| ||.|||| |.|.|||..| || |||||||..||||
RBAM_019250__ 146 TCATGTGT---GTGCTTTTAACTGTGCTTAAG--AAGTGGAAAACCGGAT 190
BSNT_03172___ 191 GGCAGGAGCTGCGCTC-TCTGAAAAAGAACGG-AGGGATCCT-----CTC 233
|||..||.||||| || |.|||| |.||| ||||..||| |.|
RBAM_019250__ 191 GGCGTGAACTGCG-TCTTTTGAA----ATCGGAAGGGGGCCTGCTGGCGC 235
BSNT_03172___ 234 TTTATTTCTTGCTTCTATCCTGATTTCGATCAACTGGTTTGTATACATAT 283
|||.|||| |||||..|..|.|||||..|.||.||||||||.|||||||
RBAM_019250__ 236 TTTTTTTC--GCTTCCGTTTTAATTTCCGTTAATTGGTTTGTGTACATAT 283
BSNT_03172___ 284 GGGCTGTAAACCATGGCTTTTTGCTTGAGGCTAGTCTTGGCTATTACATT 333
||||.||.||.||.||||||||||||||.||.|||||.||.||.||||||
RBAM_019250__ 284 GGGCCGTCAATCACGGCTTTTTGCTTGAAGCAAGTCTCGGGTACTACATT 333
BSNT_03172___ 334 AATCCGCTTGTATCAGTGCTCCTTGGG-ATTTTATTTTTAAAGGAAAAAC 382
||||||||.||.||.||.|| .||||| ||..||||.|||||.|||||.|
RBAM_019250__ 334 AATCCGCTCGTTTCCGTTCT-TTTGGGCATCCTATTCTTAAAAGAAAAGC 382
BSNT_03172___ 383 TGAATCGCC----TGCAATTAGTGGCCGTTTCGATTGC---GGCAGCCGG 425
|.|| | |||||..||..||||||||.||||| |||.|||
RBAM_019250__ 383 TTAA----CAAGATGCAAACAGCAGCCGTTTCTATTGCCGGGGCGGCC-- 426
BSNT_03172___ 426 TGTCATCATCTCGGCGTTCCAATACGGCTCCATTCCTTATGTTGCGCTTC 475
||.|||||.||.|||||.|||||.|||.|..||||||||.|.||..|.|
RBAM_019250__ 427 -GTGATCATATCTGCGTTTCAATATGGCGCGGTTCCTTATATCGCATTGC 475
BSNT_03172___ 476 TCCTCGCATTCAGCTTTGGGCTGTACGGGTTAAGCAAAAAAAGAACAAGC 525
|.||.|||||||||||.||.||||||||.|||.|.|||||||||||..||
RBAM_019250__ 476 TGCTTGCATTCAGCTTCGGCCTGTACGGCTTATGTAAAAAAAGAACCCGC 525
BSNT_03172___ 526 CTGCCGAGCGCCATCGGTTTAACGCTGGAAACATTCATGATTATGCCGAT 575
.||.|.|||.|.|||||..|.||||||||.||..|..||||||..|||..
RBAM_019250__ 526 ATGTCCAGCACGATCGGACTGACGCTGGAGACGCTTTTGATTACCCCGGC 575
BSNT_03172___ 576 TGCATTAGGGTATTT------GCTGTTCAGCGGACATG-----TTCAGCC 614
||||.| ||||| |.|.|.||||.|||..| |||
RBAM_019250__ 576 TGCACT----TATTTATTTAGGATATACAGCTGACGGGAGCACTTC---- 617
BSNT_03172___ 615 AGCGGGTGC--AGAAAGCGGAGGGACGTGGCTGCTTCTCTTTTTGGCCGG 662
|||||.| .| |.|.|||.||.|||..|||.||.|||||.||.||
RBAM_019250__ 618 --CGGGTCCTTGG---GGGCAGGAACATGGGCGCTCCTATTTTTCGCAGG 662
BSNT_03172___ 663 TGTGTTTACGGCTTTGCCGCTCTTATTGTTTGCGGAAGGAGCGAAACGGC 712
.||.||||||||..|||||||.||..|||||||.||.||.||.||.||.|
RBAM_019250__ 663 CGTATTTACGGCCCTGCCGCTGTTGCTGTTTGCAGAGGGGGCAAAGCGTC 712
BSNT_03172___ 713 TGCCACTGTATCAAGTCGGTATCTTACAATATATTGCGCCGACCATTACC 762
||||.||||||||||||||.||.||.||||||||.|||||||||||||||
RBAM_019250__ 713 TGCCGCTGTATCAAGTCGGCATTTTGCAATATATAGCGCCGACCATTACC 762
BSNT_03172___ 763 CTTCTGATCGGGCTGTTTGTTTACCATGAGCCATTTTCAAGCTCG----- 807
|||.||.||||..|.|||||.||.|||||.||.||||| ||
RBAM_019250__ 763 CTTATGCTCGGCGTATTTGTGTATCATGAACCGTTTTC-----CGGGCAA 807
BSNT_03172___ 808 AAGGCTTTTACATTCAGCTGTATATGGGCTGCGCTGATCTTGTTTACGTT 857
||.||.|||||.||||..|||||||||||.||..||.|.||||||||.||
RBAM_019250__ 808 AAAGCGTTTACCTTCATTTGTATATGGGCAGCATTGCTTTTGTTTACCTT 857
BSNT_03172___ 858 TTCACAAGTGAAGTGGAAACGGGCGTCAAAAAGCCATTGA 897
||||||..|.||.|||||.|||.||..||||||||..|.|
RBAM_019250__ 858 TTCACAGATAAAATGGAAGCGGCCGATAAAAAGCCGCTAA 897
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.