Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03162 and RBAM_019190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03162___yojJ.1.9828.seq
# -bsequence dna-align/RBAM_019190___yojJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03162___yojJ-RBAM_019190___yojJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03162___yojJ-RBAM_019190___yojJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03162___yojJ
# 2: RBAM_019190___yojJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 434/653 (66.5%)
# Similarity: 434/653 (66.5%)
# Gaps: 64/653 ( 9.8%)
# Score: 1375.5
#
#
#=======================================
BSNT_03162___ 1 ATGCGCTATGAGCAGATATCAGAAAATGCGTTCAAGGGGAAAATACAGGT 50
||||||.|....||.||..|.||||..||||| |||.|.|
RBAM_019190__ 1 ATGCGCCACACTCAAATGACGGAAAGCGCGTT-----------TACCGCT 39
BSNT_03162___ 51 GTACCTAGAGCAAA--TATT---------------AGGTGATGCATCTC- 82
| || |..|||| |||| || ||||| |
RBAM_019190__ 40 G--CC--GTTCAAACGTATTTGAAACAAATTACGGAG--GATGC----CG 79
BSNT_03162___ 83 ---TAATCTTGAAAACGCTTCACGAAAAAGACCAGTGTCTCCTTTGTGAA 129
|.||..||...||..|..|.|||||||||||.||.||.|||||.|||
RBAM_019190__ 80 GAATGATACTGCGGACATTGGATGAAAAAGACCAATGCCTTCTTTGCGAA 129
BSNT_03162___ 130 TTAGATGATTTGGGGC--ACGTTTTTCAGGACATGCAGGGGATTGCATCC 177
||||||||..||||.| ||| ||||||||.|||||||...|.||.||.
RBAM_019190__ 130 TTAGATGAACTGGGACATACG--TTTCAGGAAATGCAGGCTGTCGCTTCG 177
BSNT_03162___ 178 TCCTTTTATTTGCAATCATACATTGAGGAATTTACGCCGGCATTTATTGA 227
||.|||||..||||.|||||.||.||..|.||||||||..|.|.||..||
RBAM_019190__ 178 TCGTTTTACCTGCAGTCATATATCGAACACTTTACGCCTTCCTATACAGA 227
BSNT_03162___ 228 GCTGGCCAAGG-CGATTAAAGCCT-TATCGGAACATAAGCATGGAGCTTT 275
||||||.|.|| || |..|||.| |..|||||.|.||.||.|||||..|
RBAM_019190__ 228 GCTGGCGAGGGCCG--TGCAGCATCTGGCGGAAGAAAAACACGGAGCGCT 275
BSNT_03162___ 276 AATTGTGATTGAAAGAGCAGACCCGGTTGAACGTTTTATTCAAAAAGGCA 325
.||||||||||||.|.|||||.|||.|.||..|..|.||.||||||||.|
RBAM_019190__ 276 GATTGTGATTGAACGTGCAGATCCGCTGGACGGAATGATACAAAAAGGGA 325
BSNT_03162___ 326 CCTCCCTACACGCCGAGATCAGCTCTTCATTAATTGAAAGCATCTTTTTT 375
||..|||.||.|||||||||||..|..|.||||||||.||.||.||||.|
RBAM_019190__ 326 CCAGCCTGCATGCCGAGATCAGTGCAGCTTTAATTGAGAGTATTTTTTAT 375
BSNT_03162___ 376 CCCGGAAACCCTCTTCATGACGGCGCTTTATTAGTGAGGGAAAACAAACT 425
|||||.||.||.|||||||||||.||..||||.||.||.||||||....|
RBAM_019190__ 376 CCCGGCAATCCGCTTCATGACGGAGCCGTATTGGTCAGAGAAAACCGGGT 425
BSNT_03162___ 426 CGTGTCAGCAGCCAATGTGCTCCCGCTGACGACGAAGGAAGTGGATATCC 475
.||.|||||||||||||||||||||||.||.||.||..|.||.|||.||.
RBAM_019190__ 426 TGTATCAGCAGCCAATGTGCTCCCGCTCACAACAAAACATGTCGATCTCA 475
BSNT_03162___ 476 ATTTGGGAACCCGGCACCGGGCGGCTCTCGGTATGTCGGGCTATACGGAT 525
|.|..||.||.||.|||.||||.||..|.||..|.||||.|...||.|||
RBAM_019190__ 476 AATACGGGACGCGCCACAGGGCCGCGATGGGACTTTCGGCCGTGACTGAT 525
BSNT_03162___ 526 GCACTGGTGCTCGTGGTTTCAGAGGAAACAGGTAAGATGTCGTTTGCCAA 575
|||||.||||||||.||||||||.|||||.||.||.|||||.|||||.||
RBAM_019190__ 526 GCACTCGTGCTCGTTGTTTCAGAAGAAACGGGAAAAATGTCCTTTGCTAA 575
BSNT_03162___ 576 AGACGGTGTATTATATCCGTTAATTTCACC-------------AAGAACG 612
||||||.|.|.|.||||||.|..||||.|| |.||| .
RBAM_019190__ 576 AGACGGCGGACTGTATCCGCTTGTTTCGCCGCGGGCGCTTCATACGAA-A 624
BSNT_03162___ 613 TAA 615
|||
RBAM_019190__ 625 TAA 627
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