Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03060 and RBAM_018650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03060.1.9828.seq
# -bsequence dna-align/RBAM_018650___proH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03060-RBAM_018650___proH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03060-RBAM_018650___proH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03060
# 2: RBAM_018650___proH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 923
# Identity: 325/923 (35.2%)
# Similarity: 325/923 (35.2%)
# Gaps: 487/923 (52.8%)
# Score: 1033.0
#
#
#=======================================
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 1 GTGAAAAATACGAACAAAATACGAACAAGGGAGATGTTACCGATCTTAGA 50
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 51 TCAAAAGAAAGTTGCTTTTATCGGAGCAGGATCAATGGCTGAAGGAATGA 100
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 101 TATCAGGCATGGTCCGCGCAAAAAAAATTCCCAACCAAAACATCTGCGTG 150
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 151 ACAAACCGCCGCAATACAGAGCGACTCGCTGAATTGGAACATCAATACGG 200
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 201 TATTCAGGGCATTGCTTTTGACAGCATGAAAACCGAAGACATTGATGTCT 250
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 251 TTATTTTAGCCATGAAACCGAAGGATGCTGAAATCGCTCTGGCTGCGCTG 300
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 301 AAACGGCGTATTCAACCTCATCAAATCATCCTGTCTGTTCTGGCAGGCAT 350
BSNT_03060 0 -------------------------------------------------- 0
RBAM_018650__ 351 AACAACCTCATTTATACAACAATCATTACATGATAATCAGCCGGTTGTAA 400
BSNT_03060 1 -----------------------ATGATTGGCGCTTCTGCAACAGCTATT 27
|||||.||||..||.|||||||| |
RBAM_018650__ 401 GAGTGATGCCGAACACATCCAGCATGATCGGCGAATCGGCAACAGC---T 447
BSNT_03060 28 GCCCTTGGCAAATATGTGTCGGAAGACC-TG----------------AAG 60
|| ||| |.|||| ||||| || ||.
RBAM_018650__ 448 GC----GGC-------TTTCGG-AGACCATGTCTCTTACGGTTCAGCAAA 485
BSNT_03060 61 AAGCTGGCCGAAGCATTGCTCGGATGCATGGGCGAAGTCTATACAATCCA 110
||.| ||.|.|.|..|..|.|.||||.|.||.|||||.||....|||.|
RBAM_018650__ 486 AACC--GCGGTATCCCTTTTGGAATGCCTCGGGGAAGTGTACGTGATCAA 533
BSNT_03060 111 AGAAAATCAAATGGATATATTCACCGGAATTGCAGGCAGCGGCCCCGCGT 160
.|||.||||.|||||.||.||||||||.||.|||||||||||.||.||||
RBAM_018650__ 534 GGAAGATCAGATGGACATTTTCACCGGCATCGCAGGCAGCGGACCGGCGT 583
BSNT_03060 161 ATTTTTATTATTTAACGGAATTCATTGAAAAGACAGGCGAGGAAGCGGGC 210
|.|||||||||||||.|||.||.||||||||..||||.||.|||||.|||
RBAM_018650__ 584 ACTTTTATTATTTAATGGAGTTTATTGAAAAAGCAGGTGAAGAAGCCGGC 633
BSNT_03060 211 CTCGATAAACAGTTATCTCGAAGCATCGGCGCACAGACACTTTTAGGTGC 260
.|.||.||||.|.|.||.||.|..|||||.||.||.||..|.||.||.||
RBAM_018650__ 634 TTAGACAAACGGCTGTCCCGCAAAATCGGTGCGCAAACGTTATTGGGCGC 683
BSNT_03060 261 CGCAAAAATGCTCATGGAAACAGGAGAACATCCTGA-GATCTTAAGAGAT 309
|||.||||||||.||||||||.||.|||.|.||.|| |..||| .|.||.
RBAM_018650__ 684 CGCTAAAATGCTGATGGAAACGGGTGAAAAACCGGATGTGCTT-CGGGAA 732
BSNT_03060 310 AATATCACGTCACCTAACGGAACGACAGCAGCGGGGCTGCAAGC-CT--- 355
||.|||||.||.||.|||||.|||||.|.|||.||.||..|.|| ||
RBAM_018650__ 733 AACATCACCTCTCCAAACGGCACGACGGAAGCCGGCCTCGATGCGCTCAG 782
BSNT_03060 356 -TGAAAAAAAGCGGCGGCGGAGAAGCGATTTCTCAAGCGATAAAGCATGC 404
|.|.|| ||||||||||||||.|||.|..||||.||.||.||.||
RBAM_018650__ 783 GTCAGAA-----GGCGGCGGAGAAGCCATTGCCAAAGCCATTAAACACGC 827
BSNT_03060 405 GGCTAAGCGTTCAAAGGAAATCAGCGAAGGTATCGAAAAAACTGCAGCGC 454
|.|..|.|||||.|..||.||||||.||...||.||||||||.||||
RBAM_018650__ 828 GACCGAACGTTCTATTGAGATCAGCAAAACAATTGAAAAAACGGCAG--- 874
BSNT_03060 455 CGCTATCAGGAGTGATAAAGTGA 477
|.||||.|
RBAM_018650__ 875 CACTATAA--------------- 882
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