Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05967 and RBAM_018230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:28
# Commandline: needle
# -asequence dna-align/BSNT_05967___yxjC.1.9828.seq
# -bsequence dna-align/RBAM_018230___yxjC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05967___yxjC-RBAM_018230___yxjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05967___yxjC-RBAM_018230___yxjC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05967___yxjC
# 2: RBAM_018230___yxjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1465
# Identity: 1073/1465 (73.2%)
# Similarity: 1073/1465 (73.2%)
# Gaps: 74/1465 ( 5.1%)
# Score: 3799.5
#
#
#=======================================
BSNT_05967___ 1 GTGGA-ACTGATCATCATTCTATTGGCGTTAGGTTTGCTGATGTTTACGG 49
||||| |.|| |.||.|||.|||||||.|||||..|||||||||||.|||
RBAM_018230__ 1 GTGGACATTG-TTATTATTTTATTGGCATTAGGCATGCTGATGTTTGCGG 49
BSNT_05967___ 50 CGTATCGGGGATTTTCTGTCATATTGTTTGCGCCGATTTGCGCGTTATTC 99
|.||.|||||.|||||.|||||.||.||.||.||||||||.|||.|.||.
RBAM_018230__ 50 CTTACCGGGGCTTTTCAGTCATTTTATTCGCCCCGATTTGTGCGCTGTTT 99
BSNT_05967___ 100 GCGGTGCTGCTGACAGATCCAAGCCATGTGCTTCCTTTTTTTTC--ATCA 147
||.|||||.|||||||||||||||...||.||||||||.||.|| ||
RBAM_018230__ 100 GCCGTGCTCCTGACAGATCCAAGCTTCGTACTTCCTTTCTTCTCGAAT-- 147
BSNT_05967___ 148 ATTTTTATGGAGAAGATGGCGGGTTTTATTAAGCTGTATTTCCCAGTGTT 197
||.||||||||||||||||..||.|||||||||||||||||.||.||.||
RBAM_018230__ 148 ATATTTATGGAGAAGATGGTAGGATTTATTAAGCTGTATTTTCCCGTATT 197
BSNT_05967___ 198 TTTGCTCGGTGCCATTTTTGGAAAGGTCGTTGAAATGGCCGGGCTTGCGG 247
|.|..|.||.|||.|||||||.|||||.||||||||..|||||||.||.|
RBAM_018230__ 198 TCTTTTAGGGGCCGTTTTTGGCAAGGTTGTTGAAATATCCGGGCTCGCCG 247
BSNT_05967___ 248 TATCAATCGCGAAAACAATTGTCCGGCTTGTCGGGGCAAAAAGAGCGATA 297
..||.||.||.||||||||.|||.|.|||||.||.|||||||||||.||.
RBAM_018230__ 248 AGTCGATTGCAAAAACAATCGTCAGACTTGTGGGAGCAAAAAGAGCCATT 297
BSNT_05967___ 298 CTTGCCATTGTGCTGATGGGTGCTGTCTTGACGTACAGCGGTGTCAGCCT 347
||.|||||.||..|.||||||||..|.||.|||||||||||.|||||.||
RBAM_018230__ 298 CTCGCCATCGTCTTAATGGGTGCGATTTTAACGTACAGCGGCGTCAGTCT 347
BSNT_05967___ 348 GTTTGTTGTCGTATTTGCCGTATATCCTTTTGCGAAAAACATGTTCCAAG 397
.||.||.|..||.||||||.|.|||||.|||||.||||||.|.||.....
RBAM_018230__ 348 CTTCGTAGCGGTGTTTGCCATTTATCCGTTTGCTAAAAACCTATTTATTA 397
BSNT_05967___ 398 AAGCAAACATACCAAAACGCCTCATCCCGGGAACGATTGCTTTAGGTGCT 447
||||..|.||.||.||.||.||.||.||.||.||||||||.||.||.||.
RBAM_018230__ 398 AAGCTGATATTCCCAAGCGTCTGATACCCGGTACGATTGCATTGGGCGCC 447
BSNT_05967___ 448 TTTACGTTTACGATGGACGCACTTCCGGGGACGCCGCAAATCCAAAATGT 497
|||||.|||||.|||||.||.|||||.||.||.||||||||.||||||||
RBAM_018230__ 448 TTTACATTTACAATGGATGCGCTTCCCGGCACACCGCAAATTCAAAATGT 497
BSNT_05967___ 498 CATCCCGACGTCGTTTTTCAAAACAGACATTTATGCCGCCCCTTGGCTGG 547
|||.|||||..|.|||||.||||||.|||||||||||||.||.|||||.|
RBAM_018230__ 498 CATTCCGACCGCTTTTTTTAAAACAAACATTTATGCCGCTCCCTGGCTCG 547
BSNT_05967___ 548 GCTTGATGGGCGCAGTGATTGTGCTGGCAGCTGGGATGCTCTATTTGGAA 597
|..||||.||.||||...|||||||..|.||.||.|||.|.|||||.|||
RBAM_018230__ 548 GACTGATTGGTGCAGCATTTGTGCTTACGGCCGGAATGATTTATTTAGAA 597
BSNT_05967___ 598 TCAAGGCGGAAGAAAGCGCAGGC--AT-CTGGCGAAGGATATGGCGGTTT 644
||..||||.||.||||| ||| || |.||.|||||.||||..||.||
RBAM_018230__ 598 TCCCGGCGCAAAAAAGC---GGCCAATGCCGGAGAAGGCTATGCTGGATT 644
BSNT_05967___ 645 T---------GATTC----GCA---GAATGCTC----CT-GCTCCTGAAT 673
| |.||| ||| ||||.||| || |||..||||.
RBAM_018230__ 645 TCAACCTGAAGTTTCCGCTGCAGAGGAATCCTCTAGTCTGGCTAATGAAA 694
BSNT_05967___ 674 C-GATTGAGTCCGCGGCTG---AACCGGAAAAAAGCCCGATTCGGCACGC 719
| .|| .||.||| .||||.||...|||||....|||||.|.
RBAM_018230__ 695 CACAT-------ACGCCTGTTTTACCGCAACCCAGCCCCGCGCGGCAAGT 737
BSNT_05967___ 720 GCTTGCCTTTGTCCCGCTTATTCTCGTCGGTG-CAGTGAATAAATATTTC 768
|||.||||||||.||||||||.||.||.||.| || ||||.||||..|||
RBAM_018230__ 738 GCTCGCCTTTGTTCCGCTTATCCTTGTGGGAGTCA-TGAACAAATGCTTC 786
BSNT_05967___ 769 ACCATTTACCTGCCAAAGTGGTATCCGAATGGATTTGATTTTTCTTCCAT 818
||.||.|..||.||..|.|||||.||..|.||||||||||||.|..|..|
RBAM_018230__ 787 ACGATGTGGCTCCCGCATTGGTACCCTGACGGATTTGATTTTGCGCCGCT 836
BSNT_05967___ 819 AGGATTAAAGGAGTTCGGCAGGCTTGATATTTCTTCAGCGGCTGCTATTT 868
.||..||.|.|.||||||.|.|.||||..||||.||.|...||||.||.|
RBAM_018230__ 837 CGGGCTAGAAGCGTTCGGGAAGATTGACCTTTCCTCCGTCACTGCGATCT 886
BSNT_05967___ 869 GGTCGGTGGAGATTGCTTTAGTGATTGGCATCATCACAACGATTTTATTT 918
||||.||.||..|.||..|..|.||.||.|||||.|||||||||||.||.
RBAM_018230__ 887 GGTCAGTAGAACTCGCACTGTTCATCGGAATCATGACAACGATTTTGTTC 936
BSNT_05967___ 919 GATTGGAGAAGTGTGTTTGCC----CAA-TTGAAGGAAGGGCTGAATGAA 963
|||||||.||..|| || ||| |||||.|||||.||||||||.
RBAM_018230__ 937 GATTGGAAAAAAGT-----CCTCTTCAATTTGAAAGAAGGACTGAATGAG 981
BSNT_05967___ 964 GGAATTGGCGGCGCCTTGCTGGCATCTATGAATACGGGTGCCGAGTACGG 1013
||.||.||.||||||||||||||.||.||||||||.||.|||||.|||||
RBAM_018230__ 982 GGCATCGGGGGCGCCTTGCTGGCGTCGATGAATACAGGAGCCGAATACGG 1031
BSNT_05967___ 1014 GTTCGGCGGCATTATCGCCGCGCTGCCGGGGTTTCATAAGCTGAGCAGCG 1063
.||.||||||||.||.||.|||||.||.||.|||.|.|.|.|.|||||||
RBAM_018230__ 1032 ATTTGGCGGCATCATTGCGGCGCTTCCCGGCTTTAAAATGGTCAGCAGCG 1081
BSNT_05967___ 1064 GTATTTCACATACTTTTACCGATCCGCTTGTAAATGGCGCCGTTACGACA 1113
|.||.||.||.||.|||||.||||||||.||.||.||.||.||.|||||.
RBAM_018230__ 1082 GCATATCGCAGACGTTTACAGATCCGCTCGTCAACGGAGCGGTGACGACC 1131
BSNT_05967___ 1114 ACTGCGCTGGCGGGAATCACCGGCTCGGCTTCAGGAGGAATGGGCATTGC 1163
||||||||.||.||.||.||.||.|||||.|||||||||||||||||.||
RBAM_018230__ 1132 ACTGCGCTTGCCGGGATTACAGGATCGGCATCAGGAGGAATGGGCATCGC 1181
BSNT_05967___ 1164 GTTAAGCGCGATGTCAG-AGCAGTACTTACAG--GCGATTCAGGCTTATA 1210
.||||||.||||||||| ||| ||| ||||| || |.||| |||
RBAM_018230__ 1182 TTTAAGCACGATGTCAGCAGC-GTA--TACAGAAGC-AATCA-----ATA 1222
BSNT_05967___ 1211 ------ATATTCCGCCGGAGGTGATGCATCGAGTCATTTCAATGGCATCA 1254
|.||.|||||||||||.|||||.||.||.||.||.|||||.||.
RBAM_018230__ 1223 CATTCCACATCCCGCCGGAGGTCATGCACCGGGTGATCTCGATGGCCTCC 1272
BSNT_05967___ 1255 GGCGGGATGGACACACTGCCGCATAATGGCGCCGTCATTACGCTTCTGGC 1304
||||||||||||||.||.||||||||||||||||||||||||||.||.||
RBAM_018230__ 1273 GGCGGGATGGACACTCTTCCGCATAATGGCGCCGTCATTACGCTGCTCGC 1322
BSNT_05967___ 1305 TGTGACGGGACTGACTCACAGGCAATCGTATCGCGATATTTTTGCAATCA 1354
.||.||.||..||||.|||.|.|||||.||..|.|||||.|||||.||.|
RBAM_018230__ 1323 GGTCACCGGGTTGACCCACCGCCAATCCTACAGGGATATCTTTGCCATTA 1372
BSNT_05967___ 1355 CGCTCATCAAAACGGCTGCCGTATTTGCTGTGATCGCGATTTACAGCCTG 1404
|..||||.|||||.||.||.||.||||...|.|||||.||||||||.|||
RBAM_018230__ 1373 CCGTCATTAAAACAGCCGCTGTGTTTGTCATCATCGCCATTTACAGTCTG 1422
BSNT_05967___ 1405 ACTGGTCTAGTGTAG 1419
||.||.||.||||||
RBAM_018230__ 1423 ACGGGCCTTGTGTAG 1437
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