Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02722 and RBAM_016620
See
Amino acid alignment /
Visit
BSNT_02722 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_02722___ymfA.1.9828.seq
# -bsequence dna-align/RBAM_016620___ymfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02722___ymfA-RBAM_016620___ymfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02722___ymfA-RBAM_016620___ymfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02722___ymfA
# 2: RBAM_016620___ymfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1674
# Identity: 1360/1674 (81.2%)
# Similarity: 1360/1674 (81.2%)
# Gaps: 12/1674 ( 0.7%)
# Score: 5557.5
#
#
#=======================================
BSNT_02722___ 1 TTGAAAAAGAAAAATACAGAAAACGTTAGAATTATCGCCCTTGGCGGTGT 50
||||||||||||||||||||||||||.||||||||||||||||||||.||
RBAM_016620__ 1 TTGAAAAAGAAAAATACAGAAAACGTCAGAATTATCGCCCTTGGCGGCGT 50
BSNT_02722___ 51 CGGAGAGATTGGGAAGAACCTTTATGTCATTGAAATTGACTCAGACATAT 100
||||||.||||||||||||||.||||||||||||||||||||||||||||
RBAM_016620__ 51 CGGAGAAATTGGGAAGAACCTATATGTCATTGAAATTGACTCAGACATAT 100
BSNT_02722___ 101 TTGTCGTTGATGCCGGCCTTATGCATCCAGAAAACGAAATGCTCGGTATT 150
||||.||.|||||.||.||.|||||.||.|||||.|||||||||||||||
RBAM_016620__ 101 TTGTAGTGGATGCAGGGCTGATGCACCCTGAAAATGAAATGCTCGGTATT 150
BSNT_02722___ 151 GATGTAGTGATTCCTGACATATCATATTTGATTGAACGGGCTGACCGCGT 200
|||||.||.|||||.||.||.||.||.||..|.|||||||||||||||||
RBAM_016620__ 151 GATGTCGTCATTCCGGATATTTCCTACTTAGTAGAACGGGCTGACCGCGT 200
BSNT_02722___ 201 CAAGGCAATCTTTTTAACGCACGGGCACGATGAAAATATCGGCGGCGTTT 250
.|||||.||||||.|.||.|||||||||||||||||.|||||.|||||.|
RBAM_016620__ 201 GAAGGCCATCTTTCTGACACACGGGCACGATGAAAACATCGGGGGCGTCT 250
BSNT_02722___ 251 TTTACTTATTAAACAAGCTGTCCGTTCCAGTGTACGGAACAAAACTGACG 300
||||.|||||.||.||||||||.||.||.||.||||||||.||.||.|||
RBAM_016620__ 251 TTTATTTATTGAATAAGCTGTCGGTGCCGGTATACGGAACGAAGCTTACG 300
BSNT_02722___ 301 CTTGCACTGTTAAGAGAGAAATTAAAACAATACGGACATAACCGAAAAAC 350
||||||.|..|.|||||.|||.|.||.||.|||||.|||||.||||||.|
RBAM_016620__ 301 CTTGCATTACTGAGAGAAAAACTCAAGCAGTACGGGCATAATCGAAAAGC 350
BSNT_02722___ 351 TGATTTAAGAGAAATTCACTCAAAATCTGTCATTACATTTGAATCAACAA 400
||||||..|.|||.|||||||.|||||.||||||||||||||||||||.|
RBAM_016620__ 351 TGATTTGCGTGAAGTTCACTCTAAATCAGTCATTACATTTGAATCAACGA 400
BSNT_02722___ 401 AAGTATCGTTCTTTAGAACGATTCACAGCATTCCTGATTCTGTAGGTGTG 450
|||||||||||||||.||||||||||||.|||||.|||||.||.||.||.
RBAM_016620__ 401 AAGTATCGTTCTTTAAAACGATTCACAGTATTCCGGATTCAGTGGGAGTC 450
BSNT_02722___ 451 AGCTTTAAAACATCACTTGGATCTATTGTATGCACGGGAGACTTCAAATT 500
|||||.||||||||||||||.|||||||||||||||||||||||||||||
RBAM_016620__ 451 AGCTTCAAAACATCACTTGGCTCTATTGTATGCACGGGAGACTTCAAATT 500
BSNT_02722___ 501 TGACCAAACACCTGCACTT------AATCAGACGTGCGACATTGGCGAGA 544
||||||.||.|||| ||| ||||| ||.||.||||||||.|
RBAM_016620__ 501 TGACCAGACGCCTG--CTTATCACCAATCA----TGTGATATTGGCGAAA 544
BSNT_02722___ 545 TCGCCAAGATCGGCAATAGCGGCGTGCTCGCTCTGCTTTCTGACAGTGCA 594
|.|||||.|||||.||.||||||||||||||.||||||||||||||.||.
RBAM_016620__ 545 TTGCCAAAATCGGAAACAGCGGCGTGCTCGCCCTGCTTTCTGACAGCGCC 594
BSNT_02722___ 595 AATGCGGAACGGCCGGGTTACACCCCTTCGGAAGCGGCTGTCAGCGGAGA 644
||||||||.||.|||||.||.||.||.||.|||||...|||.|||||.||
RBAM_016620__ 595 AATGCGGAGCGCCCGGGGTATACTCCGTCAGAAGCATATGTAAGCGGTGA 644
BSNT_02722___ 645 AATTTCGGATGCGCTGTATAATTCACAGAACCGGGTGATTATTGCTGTTT 694
||||.|.||||||.||.|.||||||.|.|||||.||.||.||||||||.|
RBAM_016620__ 645 AATTGCCGATGCGATGAACAATTCAGAAAACCGTGTCATCATTGCTGTAT 694
BSNT_02722___ 695 TCGCATCCAATATTAACCGGATTCAGCAAGTCATTCATGCAGCGGCTCAA 744
||||.||.|||||.||||||||.||||||||.||.||.||.||.|..||.
RBAM_016620__ 695 TCGCGTCTAATATCAACCGGATCCAGCAAGTGATACAGGCTGCCGTCCAG 744
BSNT_02722___ 745 AATGGCAGAAAGATTGCCGTAGCCGGAAAAAATCTTCAATCTGTCCTGCA 794
||.|||.|.||..||||..|.||||||||||||||.|||...||.||.||
RBAM_016620__ 745 AACGGCCGCAAACTTGCAATCGCCGGAAAAAATCTGCAAAACGTGCTTCA 794
BSNT_02722___ 795 GCTGGCGAGAAAGTTAGGATACATTGAAGCAGATGATGAATTGTTTATTT 844
|||||.|.|.|||.|.||.||.||||||||.||.||||||.||||||||.
RBAM_016620__ 795 GCTGGGGCGCAAGCTCGGCTATATTGAAGCCGAAGATGAAATGTTTATTC 844
BSNT_02722___ 845 CTGTACAGGATGTCAAAAAATATCCGAAGCGCGAAGTGGCCATTATTACA 894
||||.||||||||.|||||||||||||||||.||||||||.|||.|||||
RBAM_016620__ 845 CTGTGCAGGATGTGAAAAAATATCCGAAGCGGGAAGTGGCAATTGTTACA 894
BSNT_02722___ 895 GCCGGAAGCCAAGGTGAACCATTAGCTGCTTTGACAAGAATGGCAAACAA 944
|||||||||||.|||||.||..|.||.|||.|.||..|.|||||.||..|
RBAM_016620__ 895 GCCGGAAGCCATGGTGAGCCGCTGGCCGCTCTTACGCGGATGGCCAAGCA 944
BSNT_02722___ 945 AGCTCACAAACAGCTGAACATTGAAGAAGGGGATACGGTGGTCATTGCGT 994
.||.|||||.|||||.||||||||||||||.||.||.||.||||||||.|
RBAM_016620__ 945 GGCGCACAAGCAGCTTAACATTGAAGAAGGAGACACCGTTGTCATTGCAT 994
BSNT_02722___ 995 CAACTCCGATTCCCGGGCAGGAACTCATTTACTCTAAAACAGTAGATCTT 1044
||||.||||||||.|||||.|||.|.||.||.||.|||||.||..|.||.
RBAM_016620__ 995 CAACACCGATTCCGGGGCATGAATTGATATATTCCAAAACCGTCAACCTG 1044
BSNT_02722___ 1045 CTTGCGAGAGCCGGTGCACAAGTCATCTTTGCCCAAAAGCGTGTTCATGT 1094
|||||..|.|||||.||.||||||||.||.||||||||.||.||.|||||
RBAM_016620__ 1045 CTTGCCCGCGCCGGCGCTCAAGTCATTTTCGCCCAAAAACGCGTGCATGT 1094
BSNT_02722___ 1095 ATCAGGACACGGCTCACAAGAAGAGTTAAAGCTGATGATCAACCTGCTTA 1144
.||.||.|||||.||.||.|||||.||.||.||.|||.|.||..||||.|
RBAM_016620__ 1095 GTCCGGGCACGGTTCGCAGGAAGAATTGAAACTCATGCTTAATTTGCTGA 1144
BSNT_02722___ 1145 AACCAAAATATTTGATTCCTGTAAACGGCGAATACAGAATGCAAAAAGCT 1194
||||.||||||||.|||||.||.|||||.||||.|||||||||||||||.
RBAM_016620__ 1145 AACCGAAATATTTAATTCCGGTTAACGGTGAATTCAGAATGCAAAAAGCG 1194
BSNT_02722___ 1195 CATTCAAAAATCGCTGAAGAAACCGGCATGAAGCGCAGTGACATCTTCTT 1244
|||||.||||||||.|||||.|.|||||||||.|||||.|||||.|||||
RBAM_016620__ 1195 CATTCCAAAATCGCAGAAGAGATCGGCATGAAACGCAGCGACATTTTCTT 1244
BSNT_02722___ 1245 AATTGAAAAAGGCGACGTCGTTGAATTCCGCGGCCAAAACGTAAAAATTG 1294
.|||||||||||.|||||||||||||||||||||||.||.||.|||||.|
RBAM_016620__ 1245 GATTGAAAAAGGTGACGTCGTTGAATTCCGCGGCCAGAATGTGAAAATCG 1294
BSNT_02722___ 1295 GGGATAAAGTTCCTTACGGCAATATTTTAATTGATGGTTTAGGTGTCGGT 1344
||||||||||..|.|||||.||..|.||.|||||.||..|.||.|||||.
RBAM_016620__ 1295 GGGATAAAGTCACGTACGGAAACGTGTTGATTGACGGCCTCGGAGTCGGC 1344
BSNT_02722___ 1345 GATATCGGCAATATCGTATTGAGAGACCGCCGCTTGCTTTCACAGGACGG 1394
||.||||||||.|||||..||||||||||||||||..|.|||||.|||||
RBAM_016620__ 1345 GACATCGGCAACATCGTGCTGAGAGACCGCCGCTTATTGTCACAAGACGG 1394
BSNT_02722___ 1395 AATTTTAATCGTTGTCATTACACTTGATAAACAAAAGAAACATCTTGTGT 1444
.|||.|.|||||.||.|||.||||.|||||.||.||.||..|.||.||.|
RBAM_016620__ 1395 CATTCTCATCGTCGTAATTTCACTCGATAAGCAGAAAAAGAACCTCGTAT 1444
BSNT_02722___ 1445 CAGGACCAGAAATTATCACTCGCGGCTTTGTTTATGTAAGAGAGTCTGAA 1494
||||.||.||.||.||.||.|||||.||.||.|||||.|||||.||.|||
RBAM_016620__ 1445 CAGGTCCTGAGATCATTACGCGCGGTTTCGTATATGTCAGAGAATCAGAA 1494
BSNT_02722___ 1495 GGTCTAATCGTACAGGCTACTGAGCTCGTCCGGTCCATCGTGACAGAAGC 1544
|||.||||.|||||.|||||||||||||||||.||.|||||.||.|||||
RBAM_016620__ 1495 GGTTTAATTGTACAAGCTACTGAGCTCGTCCGCTCTATCGTAACTGAAGC 1544
BSNT_02722___ 1545 GACTGAAACATCAAATGTCGAATGGTCAACGCTGAAGCAGGCAATGCGGG 1594
|||.||||||||....||.||||||||.||||||||.||.||.|||||.|
RBAM_016620__ 1545 GACGGAAACATCTGCCGTAGAATGGTCCACGCTGAAACAAGCCATGCGTG 1594
BSNT_02722___ 1595 ATGCTTTGAACCAATTCCTTTATGAAAAAACGAAACGTAAACCGATGATC 1644
||||..||||.||||||||||||||||||||.|||||.||.|||||||||
RBAM_016620__ 1595 ATGCGCTGAATCAATTCCTTTATGAAAAAACAAAACGCAAGCCGATGATC 1644
BSNT_02722___ 1645 ATCCCAATTATTATGGAAGTATAA 1668
||.||.||.|||||||||||||||
RBAM_016620__ 1645 ATTCCGATCATTATGGAAGTATAA 1668
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.