Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02678 and RBAM_016280

See Amino acid alignment / Visit BSNT_02678 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_02678___cheW.1.9828.seq
#    -bsequence dna-align/RBAM_016280___cheW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02678___cheW-RBAM_016280___cheW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02678___cheW-RBAM_016280___cheW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02678___cheW
# 2: RBAM_016280___cheW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 481
# Identity:     368/481 (76.5%)
# Similarity:   368/481 (76.5%)
# Gaps:          17/481 ( 3.5%)
# Score: 1400.0
# 
#
#=======================================

BSNT_02678___      1 ATGACTGCAGAAATTAAAACAGGCGAAAAAATGATAGTCTTTATGGTAAA     50
                     ||||||||.|||||.||||||||.|||||||||||.||.||||||.||||
RBAM_016280__      1 ATGACTGCTGAAATCAAAACAGGTGAAAAAATGATTGTGTTTATGATAAA     50

BSNT_02678___     51 TGGCAAAGAATATGCCATTTCCGTCACTCAGGTGAAATCAATTGAAAAAT    100
                     |||.||||||||.||.||.||.||..|.||||||||||||||||||||.|
RBAM_016280__     51 TGGGAAAGAATACGCTATCTCAGTTTCCCAGGTGAAATCAATTGAAAAGT    100

BSNT_02678___    101 GGCAAAAGCCAACGAGGGTACCTGGCGTCGAACCATATATTTGCGGGGTA    150
                     |||||||.||.||||||||.||.||.||.|||.|.|||||..||||.||.
RBAM_016280__    101 GGCAAAAACCGACGAGGGTGCCGGGTGTGGAATCTTATATCCGCGGCGTT    150

BSNT_02678___    151 ATCAATTTACGCGGGGTGGTGACTCCGGTTATTGATTTAAGAAAACGCCT    200
                     ||||||.|.|||||.|||.|.||.||||||.||||||||||||||||.||
RBAM_016280__    151 ATCAATCTGCGCGGAGTGATTACCCCGGTTCTTGATTTAAGAAAACGTCT    200

BSNT_02678___    201 GAATTTGCCAGAGTATGAAATTACCGATGAAACACGAATTATCATTATTG    250
                     ||||..|||.||..|.||.||.||.||.||.||.||.||||||||||||.
RBAM_016280__    201 GAATCAGCCTGAACAGGACATCACAGAAGAGACTCGGATTATCATTATTT    250

BSNT_02678___    251 CTTATCGTGATATTGAAGTCGGCTGGATTGTGGATGAAGCGAACGATGTG    300
                     ||||.|||||...|||.|||||.|||.|.||||||||.||.||.||.||.
RBAM_016280__    251 CTTACCGTGACGCTGATGTCGGATGGGTCGTGGATGAGGCCAATGACGTC    300

BSNT_02678___    301 ATTACCGTACACGAAAGTGAAATAGAATCTGCTCCAGAAGGCGTTCAG--    348
                     ||.|||||.||.||||.||||||.|||||.||.||.|||.||   |||  
RBAM_016280__    301 ATCACCGTGCATGAAAATGAAATCGAATCCGCGCCTGAAAGC---CAGAC    347

BSNT_02678___    349 -AAAGATACGGATGTGTCGATCGAACAGATTGTGAAACAAGAGAACAGAC    397
                      ||.||.||||||||||.|||..|||||||.||.||.|||||.|||||.|
RBAM_016280__    348 AAAGGAAACGGATGTGTGGATTAAACAGATCGTCAAGCAAGATAACAGGC    397

BSNT_02678___    398 TCTTAAATATTATTGATGCGAACGCGGTTTTGGATAAAGAAT-------C    440
                     ||.|.||||||||.||||||.|.|||||..||||||||| .|       |
RBAM_016280__    398 TCCTCAATATTATCGATGCGCATGCGGTGCTGGATAAAG-GTGCTTCGGC    446

BSNT_02678___    441 ATCTCAGTCCGCTGTGCCCGATCAAGCTTAA    471
                     ||||..|||||..|.|||   |.|.||||||
RBAM_016280__    447 ATCTGCGTCCGGAGAGCC---TAATGCTTAA    474


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