Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02577 and RBAM_015490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_02577___yloC.1.9828.seq
# -bsequence dna-align/RBAM_015490___yloC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02577___yloC-RBAM_015490___yloC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02577___yloC-RBAM_015490___yloC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02577___yloC
# 2: RBAM_015490___yloC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity: 679/908 (74.8%)
# Similarity: 679/908 (74.8%)
# Gaps: 64/908 ( 7.0%)
# Score: 2494.0
#
#
#=======================================
BSNT_02577___ 1 ATGATACGAAGTATGACAGGCTTCGGCAGTGCAAGCAAAACACAAGACGA 50
||||||||.||||||||||||||||||||.|||||||..|||.|||.|||
RBAM_015490__ 1 ATGATACGGAGTATGACAGGCTTCGGCAGCGCAAGCAGCACAAAAGGCGA 50
BSNT_02577___ 51 TCTCTCTGTAAGCGTTGAACTTAAATCTGTGAACTACAGATTTAAAGAAG 100
||||||.|.||.|||||||.|.|||||.||.||.|||||.||.|||||||
RBAM_015490__ 51 TCTCTCGGCAACCGTTGAATTGAAATCCGTCAATTACAGGTTCAAAGAAG 100
BSNT_02577___ 101 TGAACGCTCGTTTGCCAAGGCCTTTGCTATATTTTGAAGATAAGCTGAAA 150
|||||||.||..|||||.||||||||||||||.|.||.||||||||||||
RBAM_015490__ 101 TGAACGCCCGCCTGCCACGGCCTTTGCTATATGTAGAGGATAAGCTGAAA 150
BSNT_02577___ 151 CAGACCATTCTGCAGCATATTCAGCGCGGAAGAATTGAGCT-TTTC---- 195
||.||.||..||||||||||.||||||||||||.|.||||| ||||
RBAM_015490__ 151 CAAACGATATTGCAGCATATACAGCGCGGAAGAGTAGAGCTGTTTCTCAC 200
BSNT_02577___ 196 -GTATCCGTTGACAGCG---ATATGCTTGTTGAGAAAAG--GCTTGAA-A 238
|||..|..|||| ||| ||| ||||| ||.|||| |
RBAM_015490__ 201 TGTAAACAGTGAC-GCGCTCATA-----------AAAAGAAGCCTGAACA 238
BSNT_02577___ 239 TTGATTGGCCGCTGCTCGATGAATTTGT---CGCAGC-CGCGAGAGAT-A 283
|.||||||..|||.||.|||||||.||| |||.|| |||| | |
RBAM_015490__ 239 TCGATTGGGAGCTCCTTGATGAATATGTGAGCGCCGCACGCG-----TCA 283
BSNT_02577___ 284 TGAAGAAACGGTATCA-ATTATCTGCAGAACCCGATGTAATGGATTTCTT 332
||||..|.||.|| || ..|..|.|||||||||||||.||||||.|||||
RBAM_015490__ 284 TGAAAGAGCGCTA-CAGCCTGGCCGCAGAACCCGATGCAATGGAGTTCTT 332
BSNT_02577___ 333 TAAGCTTGATCATGTCGTCCAGGTTCATGAAGAACAGACGCAAAATGACA 382
|||..||||.|||.|.|..|||.|.||.||||||||||.||...||||||
RBAM_015490__ 333 TAAATTTGAACATATTGCGCAGATACACGAAGAACAGATGCGTGATGACA 382
BSNT_02577___ 383 AGCTGGAGGCGTTGATTATCGATGCTGCAGAAGAAGCGGTAAAAGGTCTC 432
||||.||.|...|.||.|..||.||.||.||....||.|||||.|..||.
RBAM_015490__ 383 AGCTTGAAGAAGTCATCAGGGAAGCCGCTGAGCTGGCTGTAAAGGAACTT 432
BSNT_02577___ 433 TGTGAAATGCGTGAAAAAGAGGGGCTGCTCTTAGCGAAAGACTGCCTGAT 482
|||||.|||.|.||||||||.||.|.|||.||.|||.||||||||.|..|
RBAM_015490__ 433 TGTGACATGAGGGAAAAAGAAGGACGGCTTTTGGCGGAAGACTGCTTTCT 482
BSNT_02577___ 483 GCATATTGATCAGCTTGAAGA-GCT---------GGTGAGAGAAACTGAA 522
|||.|||||.|.||||| ||| ||| |||||.|||
RBAM_015490__ 483 GCACATTGAGCGGCTTG-AGACGCTGTCCGAACAGGTGAAAGA------- 524
BSNT_02577___ 523 TTGCTGGCT---GCAGATGTCGTATCTCGTTACCGGGAACGGCTGTACGC 569
||..||| ||.|.||| ||| ||..|||||.||.||.||.|||||
RBAM_015490__ 525 --GCGCGCTTCGGCCGTTGT--TAT-TCAATACCGCGAGCGTCTTTACGC 569
BSNT_02577___ 570 CAGAATCAAAGAATGGACTGAAGACGTATTAGATGAGAGCCGGCTTGTAA 619
|.||||.||.||||||||.||.||.|...|.||.||.|||.||||..|.|
RBAM_015490__ 570 CCGAATGAAGGAATGGACGGAGGATGCGCTCGACGAAAGCAGGCTGATCA 619
BSNT_02577___ 620 CAGAATGCGCTATTTTTGCAGACCGCTCTGATATCACTGAAGAGATTACA 669
|.||||||||.|||||.||.||.||.||||||||.||.|||||.|||||.
RBAM_015490__ 620 CGGAATGCGCCATTTTCGCCGATCGTTCTGATATAACGGAAGAAATTACC 669
BSNT_02577___ 670 AGGCTGAAGAGCCATTTCGCCCAGTTTCGTGATATATTAGCTAG-TGGCG 718
|||.|||||||||||||.|..||.||.|||||||||||| ..|| .||||
RBAM_015490__ 670 AGGTTGAAGAGCCATTTTGTTCAATTCCGTGATATATTA-AAAGAAGGCG 718
BSNT_02577___ 719 GAGCTGTCGGGCGCAAACTCGACTTTCTTGTTCAGGAGCTCAATCGGGAA 768
|.||.|||||.||||||||.||.||.||||||||||||||.||.||.|||
RBAM_015490__ 719 GGGCAGTCGGCCGCAAACTTGATTTCCTTGTTCAGGAGCTTAACCGAGAA 768
BSNT_02577___ 769 GCAAATACGATCGGCTCAAAAGCAAATGATCATCAGATCACAAAGCTTGT 818
||.||.|||||||||||||||||.|||||||||||.||||||||||||||
RBAM_015490__ 769 GCGAACACGATCGGCTCAAAAGCCAATGATCATCAAATCACAAAGCTTGT 818
BSNT_02577___ 819 CGTTGAAATGAAAAGTTCTATTGAAAAAATAAAAGAACAAGTGCAAAATA 868
||||||||||||||||||||||||||||.|.||.||||||||||||||||
RBAM_015490__ 819 CGTTGAAATGAAAAGTTCTATTGAAAAATTGAAGGAACAAGTGCAAAATA 868
BSNT_02577___ 869 TAGAATAG 876
||||||||
RBAM_015490__ 869 TAGAATAG 876
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