Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02419 and RBAM_014270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_02419___ykqC.1.9828.seq
# -bsequence dna-align/RBAM_014270___ykqC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02419___ykqC-RBAM_014270___ykqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02419___ykqC-RBAM_014270___ykqC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02419___ykqC
# 2: RBAM_014270___ykqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1669
# Identity: 1406/1669 (84.2%)
# Similarity: 1406/1669 (84.2%)
# Gaps: 2/1669 ( 0.1%)
# Score: 5966.0
#
#
#=======================================
BSNT_02419___ 1 ATGAAATTTGTAAAAAATGATCAGACTGCTGTTTTCGCCCTCGGAGGTTT 50
||||||||||||||||||||.||||||||.||||||||||||||.||.||
RBAM_014270__ 1 ATGAAATTTGTAAAAAATGACCAGACTGCCGTTTTCGCCCTCGGCGGATT 50
BSNT_02419___ 51 GGGCGAAATCGGTAAAAATACGTACGCGGTGCAATTCCAGGATGAAATTG 100
||||||.|||||.|||||||||||||.||||||.||.|||||||||||||
RBAM_014270__ 51 GGGCGAGATCGGAAAAAATACGTACGGGGTGCAGTTTCAGGATGAAATTG 100
BSNT_02419___ 101 TACTGATTGATGCGGGGATCAAGTTTCCCGAGGACGAACTGCTCGGAATT 150
||||||||||||||||.||||||||.||.||.||.|||||.|||||.|||
RBAM_014270__ 101 TACTGATTGATGCGGGAATCAAGTTCCCGGAAGATGAACTTCTCGGCATT 150
BSNT_02419___ 151 GACTACGTCATCCCTGATTATACGTATTTAGTCAAAAACGAAGATAAAAT 200
||.|||||.|||||.|||||.|||||||||||.|||||.|||||||||||
RBAM_014270__ 151 GATTACGTAATCCCCGATTACACGTATTTAGTAAAAAATGAAGATAAAAT 200
BSNT_02419___ 201 TAAAGGGCTTTTTATCACCCACGGGCACGAAGACCACATCGGCGGTATTC 250
||||||.||.||||||||||||||.|||||||||||.|||||||||||||
RBAM_014270__ 201 TAAAGGTCTGTTTATCACCCACGGTCACGAAGACCATATCGGCGGTATTC 250
BSNT_02419___ 251 CATACCTGCTTAGACAAGTGAATATTCCTGTATACGGCGGAAAACTCGCG 300
|.||||||||.||||||||.||||||||.||.||||||||.|||||||||
RBAM_014270__ 251 CGTACCTGCTCAGACAAGTAAATATTCCCGTTTACGGCGGTAAACTCGCG 300
BSNT_02419___ 301 ATCGGCTTACTTCGGAATAAACTTGAAGAGCATGGATTATTAAGACAGAC 350
||||||||||||||||||||||||||||||||.||..|.|||||||||||
RBAM_014270__ 301 ATCGGCTTACTTCGGAATAAACTTGAAGAGCACGGGCTGTTAAGACAGAC 350
BSNT_02419___ 351 GAAACTGAACATTATCGGCGAGGATGATATTGTAAAGTTCCGCAAAACGG 400
.|||.|.|||||.|||||.||.||.||.||.||.|||||||||||.||..
RBAM_014270__ 351 CAAATTAAACATCATCGGTGAAGACGACATCGTGAAGTTCCGCAAGACAT 400
BSNT_02419___ 401 CTGTGTCATTCTTCAGAACAACACACAGTATTCCGGATTCCTACGGCATT 450
||||.||.|||||||||||.||||||||.|||||||||||.|||||.||.
RBAM_014270__ 401 CTGTATCCTTCTTCAGAACGACACACAGCATTCCGGATTCATACGGAATC 450
BSNT_02419___ 451 GTTGTAAAAACGCCGCCCGGAAACATCGTACATACTGGGGATTTTAAATT 500
||.||.|||||.|||||.||.||.|||||||||||.|||||.|||||.||
RBAM_014270__ 451 GTCGTCAAAACACCGCCGGGCAATATCGTACATACCGGGGACTTTAAGTT 500
BSNT_02419___ 501 CGACTTTACTCCAGTCGGCGAGCCGGCAAACTTAACGAAAATGGCCGAAA 550
|||.||.||.||.||.|||||.|||||||||||.||.||.|||||.||||
RBAM_014270__ 501 CGATTTCACACCGGTAGGCGAACCGGCAAACTTGACAAAGATGGCTGAAA 550
BSNT_02419___ 551 TCGGTAAAGAAGGCGTTTTGTGCCTTCTTTCAGACAGCACAAACAGTGAA 600
||||.||||||||||||.|||||||.|||||.|||||.|||||||||||.
RBAM_014270__ 551 TCGGGAAAGAAGGCGTTCTGTGCCTGCTTTCTGACAGTACAAACAGTGAG 600
BSNT_02419___ 601 AATCCGGAGTTTACCATGTCTGAGCGCCGTGTAGGAGAAAGCATTCATGA 650
..|||.||.||.||||||||.||.|||||.|||||.|||||||||||.||
RBAM_014270__ 601 GTTCCTGATTTCACCATGTCAGAACGCCGCGTAGGCGAAAGCATTCACGA 650
BSNT_02419___ 651 CATTTTCCGCAAGGTGGACGGCCGAATTATCTTCGCTACATTTGCGTCGA 700
.||||||||.||.|||||||||.|||||||.||.||.|||||.||.||||
RBAM_014270__ 651 TATTTTCCGAAAAGTGGACGGCAGAATTATATTTGCGACATTCGCTTCGA 700
BSNT_02419___ 701 ATATTCACCG-CTTGCAGCAGGTAATTGAAGCTGCTGTACAAAATGGAAG 749
||||.||||| ||| ||||||||.||||||||.||.||...|||.||.||
RBAM_014270__ 701 ATATACACCGTCTT-CAGCAGGTGATTGAAGCAGCCGTTTTAAACGGCAG 749
BSNT_02419___ 750 AAAAGTTGCCGTATTTGGACGCAGTATGGAATCGGCTATCGAAATTGGAC 799
|||||||||||||||.|||||||||||||||||||||||.|||||.||||
RBAM_014270__ 750 AAAAGTTGCCGTATTCGGACGCAGTATGGAATCGGCTATTGAAATCGGAC 799
BSNT_02419___ 800 AGACACTCGGTTATATTAACTGTCCTAAAAATACGTTTATTGAGCATAAC 849
|.|..||||||||.||||..||||||||||||||||||||||||||||||
RBAM_014270__ 800 AAAATCTCGGTTACATTACTTGTCCTAAAAATACGTTTATTGAGCATAAC 849
BSNT_02419___ 850 GAAATCAATCGTATACCTGCTAATAAAGTAACAATTTTATGTACAGGAAG 899
||||||||||||.|.|||||.|||||||||||||||||||||||.|||||
RBAM_014270__ 850 GAAATCAATCGTTTGCCTGCCAATAAAGTAACAATTTTATGTACGGGAAG 899
BSNT_02419___ 900 CCAAGGGGAACCAATGGCGGCGTTATCAAGAATTGCAAACGGCACACACC 949
||||||.|||||.|||||||||||||||.|.||.||.|||||.||.||||
RBAM_014270__ 900 CCAAGGTGAACCGATGGCGGCGTTATCACGCATCGCTAACGGGACGCACC 949
BSNT_02419___ 950 GCCAAATTTCAATCAATCCTGGGGATACAGTCGTATTTTCTTCATCCCCT 999
|.||.|||||.||.|||||.||.|||||.|||||.||||||||.||.||.
RBAM_014270__ 950 GGCAGATTTCCATTAATCCCGGAGATACGGTCGTCTTTTCTTCCTCTCCG 999
BSNT_02419___ 1000 ATCCCAGGCAACACAATCAGCGTGAGTCGAACAATCAACCAGCTGTATCG 1049
||.||.||.||||||||||||||.||.||.||.||||||||||||||.||
RBAM_014270__ 1000 ATTCCCGGAAACACAATCAGCGTAAGCCGCACCATCAACCAGCTGTACCG 1049
BSNT_02419___ 1050 TGCGGGTGCTGAGGTTATTCATGGCCCTCTTAACGATATCCATACATCCG 1099
||||||.||.||.||.|||||.||..|..|.||.||.||.||||||||||
RBAM_014270__ 1050 TGCGGGCGCAGAAGTCATTCACGGTTCATTGAATGACATTCATACATCCG 1099
BSNT_02419___ 1100 GTCACGGCGGACAGGAAGAACAGAAGCTGATGCTTCGTTTAATCAAACCT 1149
|.|||||||||||||||||.|||||..|.|||||.||..|.||||||||.
RBAM_014270__ 1100 GACACGGCGGACAGGAAGAGCAGAAATTAATGCTCCGCCTGATCAAACCG 1149
BSNT_02419___ 1150 AAATTCTTCATGCCGATTCACGGTGAGTACAGAATGCAAAAGATGCATGT 1199
||.|||||.|||||||||||||||||||||||||||||.||.|||||.||
RBAM_014270__ 1150 AAGTTCTTTATGCCGATTCACGGTGAGTACAGAATGCAGAAAATGCACGT 1199
BSNT_02419___ 1200 CAAACTTGCAACAGATTGTGGCATCCCAGAGGAAAACTGCTTTATCATGG 1249
||||||.||.||.|||||.|||||.||.||.|||||||||||||||||||
RBAM_014270__ 1200 CAAACTCGCGACTGATTGCGGCATACCCGAAGAAAACTGCTTTATCATGG 1249
BSNT_02419___ 1250 ATAATGGTGAAGTATTAGCGCTTAAAGGCGACGAGGCTTCAGTTGCAGGA 1299
|||||||.|||||..|.||.||.||||||||.||.||..|.||.|||||.
RBAM_014270__ 1250 ATAATGGCGAAGTGCTGGCCCTCAAAGGCGAAGAAGCCGCTGTGGCAGGC 1299
BSNT_02419___ 1300 AAAATCCCGTCCGGTTCAGTGTACATTGACGGAAGCGGTATCGGTGATAT 1349
|||||.||||||||.||.||.|||||||||||||||||.|||||||||||
RBAM_014270__ 1300 AAAATTCCGTCCGGCTCCGTTTACATTGACGGAAGCGGAATCGGTGATAT 1349
BSNT_02419___ 1350 TGGCAATATCGTACTTCGTGATCGCAGAATTCTCTCTGAAGAAGGACTTG 1399
.|||||||||||.||.||.||.|||.|.|||||.||.||||||||.||||
RBAM_014270__ 1350 CGGCAATATCGTGCTCCGCGACCGCCGCATTCTTTCAGAAGAAGGCCTTG 1399
BSNT_02419___ 1400 TCATCGTTGTTGTCAGCATTGACATGGACGACTTCAAGATTTCAGCGGGT 1449
|.|||||||||||||||||..|.|||||.|||||.|.|.||||.|||||.
RBAM_014270__ 1400 TTATCGTTGTTGTCAGCATCAATATGGATGACTTTAGGGTTTCGGCGGGG 1449
BSNT_02419___ 1450 CCAGATTTGATTTCCAGAGGATTTGTGTACATGAGAGAATCTGGCGACTT 1499
||.|||||.||.||.|||||.|||||.||||||||||||||.||.||.||
RBAM_014270__ 1450 CCTGATTTAATCTCAAGAGGTTTTGTATACATGAGAGAATCCGGTGATTT 1499
BSNT_02419___ 1500 GATCAACGACGCTCAAGAGCTCATTTCAAATCACTTACAAAAAGTAATGG 1549
||||||.|||||.||..|||||||||||||.||..|..|.||||||||||
RBAM_014270__ 1500 GATCAATGACGCGCAGCAGCTCATTTCAAACCATCTGGAGAAAGTAATGG 1549
BSNT_02419___ 1550 AACGAAAAACGACTCAATGGTCTGAAATCAAAAACGAGATTACAGACACT 1599
|.||.|||||.||.||.|||||.|||||.||||||||.|||||.||.||.
RBAM_014270__ 1550 ATCGGAAAACAACGCAGTGGTCCGAAATTAAAAACGAAATTACCGATACA 1599
BSNT_02419___ 1600 CTTGCGCCTTTCTTGTACGAAAAAACAAAGCGCCGTCCTATGATCCTGCC 1649
|||||.||.|||.|.||||||||||||||.|||||.||.||||||||.||
RBAM_014270__ 1600 CTTGCTCCGTTCCTATACGAAAAAACAAAACGCCGCCCGATGATCCTTCC 1649
BSNT_02419___ 1650 GATCATTATGGAGGTTTAA 1668
|||||||||||||||.|||
RBAM_014270__ 1650 GATCATTATGGAGGTCTAA 1668
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.