Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02397 and RBAM_014090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:06
# Commandline: needle
# -asequence dna-align/BSNT_02397___yknX.1.9828.seq
# -bsequence dna-align/RBAM_014090___yknX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02397___yknX-RBAM_014090___yknX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02397___yknX-RBAM_014090___yknX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02397___yknX
# 2: RBAM_014090___yknX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1156
# Identity: 845/1156 (73.1%)
# Similarity: 845/1156 (73.1%)
# Gaps: 41/1156 ( 3.5%)
# Score: 2982.0
#
#
#=======================================
BSNT_02397___ 1 ATGAAAAAAGTCTGGATCGGAATTGGAATCGCAGTTATAGTCGCTCTTTT 50
|||||||||.|.|||||||||||.||.|||||.||.||.||.||..|.||
RBAM_014090__ 1 ATGAAAAAAATTTGGATCGGAATCGGCATCGCCGTAATTGTTGCAGTATT 50
BSNT_02397___ 51 TGTTGGAATCAATATATACCGGTCTGCCGCTCCAACAAGCGGCAGCGCCG 100
..|.||.||||||||.||...||||||||||||..|..||||.|||||||
RBAM_014090__ 51 CATCGGTATCAATATTTATAAGTCTGCCGCTCCCGCGGGCGGAAGCGCCG 100
BSNT_02397___ 101 GCAAGGAGATACAGACGGGGAGCGTTGAAGAAAATGAAATCTCATCAACG 150
|.||..|.||..|.||.||.|.|.|.|||.|.|..||||||||.||.|||
RBAM_014090__ 101 GGAAAAAAATCGAAACCGGAACCATGGAAAATAGAGAAATCTCCTCTACG 150
BSNT_02397___ 151 GTTATGGTTCCTGGCACGCTAAAATTTTCAAATGAACAGTATGTCTTTTA 200
|||||||||||.||.||.||.|||||.||.||.|||||||||||.|||||
RBAM_014090__ 151 GTTATGGTTCCGGGAACACTTAAATTCTCTAAAGAACAGTATGTTTTTTA 200
BSNT_02397___ 201 TGAAGCGGATAAAGGGACATTAGAAGACATTAAAGTTAAGGAAGGCGATA 250
|||||||||||||||.||..|.||..|..|.|||||.||.||||||||.|
RBAM_014090__ 201 TGAAGCGGATAAAGGAACTCTTGATAAAGTGAAAGTAAAAGAAGGCGACA 250
BSNT_02397___ 251 AAGTTAAAAAGGGCACGCCTTTAGTCACCTATACAAATGAGCAGCTGAGC 300
||||.|||||.||..||.|.||||||||.|||||||||||||||||.|..
RBAM_014090__ 251 AAGTAAAAAAAGGGTCGTCGTTAGTCACGTATACAAATGAGCAGCTCAAT 300
BSNT_02397___ 301 CTGGAAAAAGAACAGAACCAGTT-----AACGTCTGAATCCAACCGGCTT 345
||.||.||||||||.||..|||| ||| ||||.||.|||.|.
RBAM_014090__ 301 CTTGATAAAGAACAAAATGAGTTGACAGAAC-----AATCAAAACGGATG 345
BSNT_02397___ 346 CAAATTGACCAAATTCAAGAAAAGTTAAAAGCCTTAGACAGCAAAGAAAG 395
|||||.||.|||.||.|||||||..|.|.|||.|||.|||||||.|||..
RBAM_014090__ 346 CAAATCGAACAAGTTGAAGAAAAACTCAGAGCATTAAACAGCAAGGAACA 395
BSNT_02397___ 396 AGAACTGGAAAAACAGGTAGGAAAGAAA---GAAGCAGAAAAACAAATCG 442
|||.||||.||||||.||.|| |.|| |||||..||||||||||.|
RBAM_014090__ 396 AGATCTGGCAAAACAAGTGGG---GGAAGCGGAAGCCAAAAAACAAATTG 442
BSNT_02397___ 443 AATCTGAACGGACAGAGCTTCAAATGCAGAAAAAAACAGCGGAGATCGAA 492
||||.||||||||.||.||.||..|.|||.|||||||.|||||.||||||
RBAM_014090__ 443 AATCCGAACGGACTGATCTGCAGCTTCAGCAAAAAACGGCGGAAATCGAA 492
BSNT_02397___ 493 TTAAAACAAACCGAGCTTCAGCGGCAGTCACTTGCCAACCGGGTGTCAGA 542
|||||.|||.|.||..|.||...||||||.||||..||.|.||||.|..|
RBAM_014090__ 493 TTAAAGCAATCTGATTTGCAAAAGCAGTCTCTTGAAAATCAGGTGGCGAA 542
BSNT_02397___ 543 TTTAGAAGTGAAAAGCGAAATTGAAGGCACCGTTATTTCTGTCAACCAAG 592
|.|..|.||.||.||.||.||.||.||.||.|||||.||.||.||.||||
RBAM_014090__ 543 TCTCAATGTTAAGAGTGAGATGGACGGGACGGTTATCTCGGTAAATCAAG 592
BSNT_02397___ 593 AAGCGGCATCCAAAAAGTCAGATATTCAAGAGCCTGTCATACATATCGGC 642
|||||||.||.|||||.||.|||||||||||.||.||.||||||||.||.
RBAM_014090__ 593 AAGCGGCTTCTAAAAAATCGGATATTCAAGAACCGGTTATACATATAGGA 642
BSNT_02397___ 643 AACCCAAAAGACCTTGTCGTCTCAGGGAAATTGTCTGAATACGATACATT 692
.||||..||.||||..||||..|.||.||.|||||.||||||||.||..|
RBAM_014090__ 643 GACCCGGAACACCTGATCGTTGCCGGCAATTTGTCCGAATACGACACGCT 692
BSNT_02397___ 693 GAAAGTCAAAAAAGGCCAGAAG-GTCACACTCACTTCAGATGTAATACAG 741
||||||.|||||.||.|| ||| ||.|||.|.||.|||||.|..||.|..
RBAM_014090__ 693 GAAAGTGAAAAAGGGACA-AAGCGTTACAATTACCTCAGACGCCATTCCA 741
BSNT_02397___ 742 GGTAAAACATGGAAAGGCACGGTTTCCGCAGTCGGGCTTGTTCCGGATCA 791
||||||||.||||||||.|..||..|.||.|||||.||.|||||.|||||
RBAM_014090__ 742 GGTAAAACGTGGAAAGGGAGAGTGGCGGCTGTCGGCCTCGTTCCTGATCA 791
BSNT_02397___ 792 GCAGGAGAGCGCTG---CGGCACAAGGAACAGAACAGGCGGTCCAATACC 838
..||...||||||| |||...||.|.||.||||||||.||.||.||.|
RBAM_014090__ 792 AAAGTCAAGCGCTGCTTCGGGGGAAAGTACGGAACAGGCCGTGCAGTATC 841
BSNT_02397___ 839 CGCTTCAAGTGAAAATAAAAGGAAATCTTCCAGAAGGAAAGCCAGGCTTT 888
||.|.||.||.||..|.|..|||||.|||||.||.||.|||||.||.|||
RBAM_014090__ 842 CGTTCCAGGTTAAGCTGATCGGAAACCTTCCGGAGGGCAAGCCGGGGTTT 891
BSNT_02397___ 889 AAATTTATCATGAATATTGAAACAGATAAACGGAAAGCAAATACGCT--- 935
|||||.||.|||||.|||||||||||.|||||||||||..|||||||
RBAM_014090__ 892 AAATTAATTATGAACATTGAAACAGACAAACGGAAAGCCGATACGCTGCC 941
BSNT_02397___ 936 -TCCTTCAAAGGCAGTCAAAAAAGA---AGATGACCAATATTATGTGTAT 981
||||.| ||.||||||||||| ||||||.| |.|..||.|.|
RBAM_014090__ 942 GTCCTCC----GCGGTCAAAAAAGACGGAGATGAGC---ACTGGGTCTTT 984
BSNT_02397___ 982 ACAGTAAAAGACGGAAAAGCAAAGCGAGTTAATGTCAAAATCGGCGA-AG 1030
||.|||||||||||.||.||.||.||.||.||.||.|||.||||||| |.
RBAM_014090__ 985 ACGGTAAAAGACGGGAAGGCCAAACGCGTGAAAGTTAAAGTCGGCGATAC 1034
BSNT_02397___ 1031 TGACAGATGACCTGACAGAAATTAAAGAGGGGCTTACCCAAGATGATCAA 1080
.| ||.||.|.||.||.||.||.||||||||||||.|..|.||||||.||
RBAM_014090__ 1035 CG-CAAATCAGCTTACGGAGATAAAAGAGGGGCTTTCAAAGGATGATAAA 1083
BSNT_02397___ 1081 GTCATTTTGAATCCATCTGATCAGG--TGACTGACGGAATGGAAGTGAAA 1128
||||||.|||||||..|||| .|| ||||||||||||.|||.||||||
RBAM_014090__ 1084 GTCATTCTGAATCCGGCTGA--CGGTTTGACTGACGGAACGGATGTGAAA 1131
BSNT_02397___ 1129 TCTTAA 1134
.|.||.
RBAM_014090__ 1132 GCATAG 1137
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.