Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02075 and RBAM_012310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_02075___yjjA.1.9828.seq
# -bsequence dna-align/RBAM_012310___hemD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02075___yjjA-RBAM_012310___hemD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02075___yjjA-RBAM_012310___hemD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02075___yjjA
# 2: RBAM_012310___hemD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity: 599/859 (69.7%)
# Similarity: 599/859 (69.7%)
# Gaps: 86/859 (10.0%)
# Score: 2003.5
#
#
#=======================================
BSNT_02075___ 1 ATGGGAAAAGGGTT--ACTTGGAAAACGCGTGGCAATCGGTGGCTCACGA 48
|||||||||||.|| || ||.|||||..|.||.|||||.||.||.||.
RBAM_012310__ 1 ATGGGAAAAGGATTGAAC--GGGAAACGGATTGCCATCGGCGGTTCGCGG 48
BSNT_02075___ 49 AAAACGGAAGAAATTAGTACAATCATTGAAAAACAGGGCGGAATACCTGT 98
|||||.|||||.||.|..|.|.|.||.|||||.||||||||||...|.||
RBAM_012310__ 49 AAAACAGAAGAGATCACAAGATTAATAGAAAAGCAGGGCGGAACGGCGGT 98
BSNT_02075___ 99 CATCCGGCCTCTCCAAGGTACAGTTTACTTAGCAGAGAAGCAGGTGGAGC 148
|.||||..|.||||||||.||.||.|||.|.||.|||.|.||..|.||.|
RBAM_012310__ 99 CGTCCGTTCCCTCCAAGGAACCGTATACCTGGCGGAGGATCAAATTGAAC 148
BSNT_02075___ 149 CGGATTTGCGGACGTTTGCGGAAGAAAAAGCTGACTGGGTCATTTTCACG 198
|.||..|..|.||.|||||.|...|||||||.||||||||.||.|||||.
RBAM_012310__ 149 CCGACGTAAGAACATTTGCCGGGCAAAAAGCCGACTGGGTAATATTCACC 198
BSNT_02075___ 199 ACAGGCATCGGGTTGGAGAC--TCTTGTCGATATGGCAGAGAAAATTGGA 246
|||||||||||...|||.|| |.||||||.||| |.||.|||||.||.
RBAM_012310__ 199 ACAGGCATCGGTACGGAAACGTTATTGTCGGTAT--CGGAAAAAATCGGT 246
BSNT_02075___ 247 CTGAAAGATGAGTTTCT-GCAGGCCATTCGCCAAGCG-AAAGCGGCATGC 294
||||||||.||.|||.| || ||||.|||...||||| |||.|||| |||
RBAM_012310__ 247 CTGAAAGAAGAATTTTTAGC-GGCCGTTCATGAAGCGAAAATCGGC-TGC 294
BSNT_02075___ 295 CGGGGATACAAAAC----GCTGTCTGCGCTGAAAAAGCTTGGAATCACAC 340
.|.||.||.||||| ||.|.|| |.||||||||.||.|||||.|
RBAM_012310__ 295 AGAGGCTATAAAACATATGCGGCCT----TAAAAAAGCTCGGCATCACGC 340
BSNT_02075___ 341 CGGAAGCTTCGGATGAAGACGGGACAACAAGAGGCTTAATCCGTTCCTTG 390
||.|.||.||.|||||||||||.|||||||||||..|.|||||.||||||
RBAM_012310__ 341 CGCATGCCTCAGATGAAGACGGTACAACAAGAGGGCTGATCCGCTCCTTG 390
BSNT_02075___ 391 GAGCCTCAC-----GACTTTTCAGGAAAAACAGTCATGGTGCAGCTTCAT 435
|| || ||||||..||..||||.|||||||.|.|||||||||
RBAM_012310__ 391 GA-----ACGATTTGACTTTAAAGATAAAAAAGTCATGATACAGCTTCAT 435
BSNT_02075___ 436 GGCGAAAAAGCGCCGGCTCTCATGGCA-TTTCTTGAAGAAAAA-GGCGC- 482
|||||||||||||||| |||.|..||| ||.|||| ||||||| ||.||
RBAM_012310__ 436 GGCGAAAAAGCGCCGG-TCTTAACGCAGTTCCTTG-AGAAAAACGGAGCG 483
BSNT_02075___ 483 ---GTCTGTCCTGCCGATTCTGCCTTATCAGCACATCCCGCCGGAGGAGG 529
||.|..|||| |||||||.||||||||.||.|.|||.||...||
RBAM_012310__ 484 GAGGTATTCCCTG----TTCTGCCGTATCAGCATATTCTGCCTGAAAGGG 529
BSNT_02075___ 530 AAACGGTGGAGCAGTTA---TGC--CGAGAGCTGATGAACGATGAGGTCG 574
|.|||||.|| || ||| .||||||||.|.||||..|||||||
RBAM_012310__ 530 AGACGGTTGA-----TAAACTGCTGGGAGAGCTGTTAAACGGAGAGGTCG 574
BSNT_02075___ 575 ATGCCGTTTGTTTTACAACGGCCATTCAGGTTCGTTCCCTGTTTGATTTT 624
|||||||.|||||||||||.||||||||.||.||.||.||.|||||||.|
RBAM_012310__ 575 ATGCCGTATGTTTTACAACAGCCATTCAAGTGCGCTCTCTCTTTGATTAT 624
BSNT_02075___ 625 GCCAAGGGGCGAGGTTATATC----AATGAAGTGAAGAAGGTATTCGAAG 670
||.||.|....||| ||| ||.|||.||.||.|||.|||||||.
RBAM_012310__ 625 GCAAAAGAAAAAGG----ATCCACAAAAGAATTGCAGCAGGCATTCGAAA 670
BSNT_02075___ 671 AAC--GCGCCATCGCAGCTGCTGTCGGAAAAGTGACTGCTGAAGCACTGC 718
||| |.|| |.||.||.||.|||||.||||||||.||||||||..|.|
RBAM_012310__ 671 AACAAGTGC--TTGCCGCCGCAGTCGGCAAAGTGACGGCTGAAGCGATCC 718
BSNT_02075___ 719 GGGAAGAGGGCATTACGAGACTGCTTGCGCCAGAGATTGAGCGGATGGGT 768
||||.||.||..|.|.|||..|.|||||.||.||.||||||||||||||.
RBAM_012310__ 719 GGGATGAAGGGGTAAAGAGGGTCCTTGCTCCGGACATTGAGCGGATGGGA 768
BSNT_02075___ 769 GCGATGATTGTTGAGCTGGCCAAGTATTATGAA-----GA---------A 804
|||||||||.||||..|..||...||.|||||| || |
RBAM_012310__ 769 GCGATGATTATTGAATTATCCCGTTACTATGAATCTCTGACCTTGTCATA 818
BSNT_02075___ 805 AAGGAATAA 813
|
RBAM_012310__ 819 A-------- 819
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