Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02062 and RBAM_012270
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02062.1.9828.seq
# -bsequence dna-align/RBAM_012270___yjgC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02062-RBAM_012270___yjgC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02062-RBAM_012270___yjgC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02062
# 2: RBAM_012270___yjgC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2995
# Identity: 1175/2995 (39.2%)
# Similarity: 1175/2995 (39.2%)
# Gaps: 1526/2995 (51.0%)
# Score: 4638.0
#
#
#=======================================
BSNT_02062 1 ---------------------------------ATGCCTGGCAAGAAAAA 17
|||.||||.|..||.||
RBAM_012270__ 1 ATGTATAGAGGGGTACAGAAAGGGGAAAAGAAAATGGCTGGTACAAAGAA 50
BSNT_02062 18 AATCACAATAAACGGCGTTGAAATGGAAGCGTCCGAGGAACAGACGGTGC 67
|.|.|||||.||.||.|||||||||||||||.|.||.|..||.||.||..
RBAM_012270__ 51 AGTTACAATCAATGGGGTTGAAATGGAAGCGCCGGACGGCCAAACCGTTT 100
BSNT_02062 68 TGCAGCTTTTGAATAACAGCTCGATTGAAGTGCCGCAAGTTTGCTATCAT 117
|||||||||||||.||.||.||.|||||.||||||||.||.||.||||||
RBAM_012270__ 101 TGCAGCTTTTGAACAATAGTTCAATTGACGTGCCGCACGTGTGTTATCAT 150
BSNT_02062 118 CCAAGCTTAGGGCCGATTGAGACATGTGATACGTGCATCGTCAGCATCAA 167
||.||..|.|||||||||||.||.||.|||||.||.|||||||...|.||
RBAM_012270__ 151 CCGAGTCTCGGGCCGATTGAAACGTGCGATACCTGTATCGTCAATGTTAA 200
BSNT_02062 168 TGGTGAGCTGAAGAGGTCGTGCTCCGCTGAATTAAAGGATGGGGATGTCA 217
.||.||.|||..|.|.|||||.|||||..||.|||||||.||.|||||||
RBAM_012270__ 201 CGGGGAACTGGTGCGTTCGTGTTCCGCGCAAATAAAGGACGGAGATGTCA 250
BSNT_02062 218 TTGATACGCTCTCACCTGACGTGAAAAAAGCGCAGGTCATCGGGATGGAC 267
|.||||||||.||..|.||.|||||||||||||||.|.|||||.||||||
RBAM_012270__ 251 TCGATACGCTTTCGTCCGATGTGAAAAAAGCGCAGATTATCGGCATGGAC 300
BSNT_02062 268 AAGATTTTATATAATCATGAGCTTTATTGTACAGTTTGCGATTACAACAA 317
||.|||||..|.||.|||||..|.||.||.||.||.||.|||||||||||
RBAM_012270__ 301 AACATTTTGCACAACCATGAATTGTACTGCACGGTCTGTGATTACAACAA 350
BSNT_02062 318 TGGGGGATGCGAAATACATAATACGGTGAAGGAAATGAAAATCAATCACC 367
||||.|.||||||.||||||||||.||.||||||||||||||||||||.|
RBAM_012270__ 351 TGGGAGCTGCGAAGTACATAATACCGTAAAGGAAATGAAAATCAATCATC 400
BSNT_02062 368 AAAGCATTCCGTTTGATCACAAGCCATACCATAAGGATGAATCCCATCCG 417
|||||||||||||.|||||.||.||.||.|.|||.||||||||..|||||
RBAM_012270__ 401 AAAGCATTCCGTTCGATCAAAAACCGTATCCTAAAGATGAATCAAATCCG 450
BSNT_02062 418 TTTTATCGGTATGATCCAGATCAATGTATATTGTGCGGACGCTGTGTTGA 467
|||||.||.||||||||.||.||.||.||.||||||||||||||.||.||
RBAM_012270__ 451 TTTTACCGATATGATCCCGACCAGTGCATTTTGTGCGGACGCTGCGTCGA 500
BSNT_02062 468 AGCATGCCAGGACGTTCAGGTAACTGAAACGCTGACCATTGACTGGGAGC 517
|||.||.||||||||.||||||||.||||||.|.|.||||||.|||||||
RBAM_012270__ 501 AGCCTGTCAGGACGTACAGGTAACCGAAACGTTAAGCATTGATTGGGAGC 550
BSNT_02062 518 GGAAACGCCCGCGCGTCATTTGGGATAACGACGTGCCGATCAATGAGTCG 567
|||||||||||||.||||||||||||.|.||.||||||||||||||.||.
RBAM_012270__ 551 GGAAACGCCCGCGGGTCATTTGGGATCAGGATGTGCCGATCAATGAATCA 600
BSNT_02062 568 TCATGTGTGTCATGCGGTCATTGTTCAACGGTCTGTCCGTGCAACGCGAT 617
||||||||.||.|||||.||||||||.|||||.|||||||||||.||.||
RBAM_012270__ 601 TCATGTGTTTCCTGCGGACATTGTTCGACGGTATGTCCGTGCAATGCCAT 650
BSNT_02062 618 GATGGAAAAAGGAATGGAAGGGGAAGCCGGATATTTAACAGGCATCAATA 667
||||||||||||.||||||||.|||||.||.||||||||||||||.||..
RBAM_012270__ 651 GATGGAAAAAGGCATGGAAGGCGAAGCGGGGTATTTAACAGGCATTAACC 700
BSNT_02062 668 ACGAAACGCTGCGACCGATGATCGAGATCACGAAAGGCGTAGAGACAGGC 717
|.||.|||||.||.||||||||.||.|||||.||.|||||.||.||.||.
RBAM_012270__ 701 AAGAGACGCTTCGGCCGATGATTGACATCACAAAGGGCGTCGAAACCGGA 750
BSNT_02062 718 TACGGCTCGATTCTCGCCATTTCTGATATGGAATCGGCCATGCGTGATGA 767
|||||.||||||.|.|||||.||.||.|||||||||||||||||.|||||
RBAM_012270__ 751 TACGGATCGATTTTGGCCATATCGGACATGGAATCGGCCATGCGGGATGA 800
BSNT_02062 768 ACGAATCAAAAAAACGAAAACCGTCTGCACGTATTGCGGCGTCGGCTGCA 817
|.|||||||.||||||||||||||.|||||.||.||.||.||.|||||||
RBAM_012270__ 801 AAGAATCAAGAAAACGAAAACCGTATGCACTTACTGTGGTGTAGGCTGCA 850
BSNT_02062 818 GCTTTGATGTCTGGACAAAGGGCAGAGACATTCTGAAAGTAGAGCCGCAG 867
|.||||||.|.|||||.||.||.|||||||||.|.||.||.|||||.|||
RBAM_012270__ 851 GTTTTGATATATGGACGAAAGGAAGAGACATTTTAAAGGTCGAGCCTCAG 900
BSNT_02062 868 GAGGAAGCGCCTGCCAACGGCATTTCTACTTGTGTAAAAGGCAAGTTCGG 917
|..||.|||||.||.||.||||||||.||.|||||.|||||.||.|||||
RBAM_012270__ 901 GCCGAGGCGCCCGCAAATGGCATTTCGACGTGTGTGAAAGGGAAATTCGG 950
BSNT_02062 918 CTGGGATTTCGTCAACAGCGAAGAACGCCTGACAAAGCCGCTGATCCGGG 967
|||||||||||||||.||.|||.|.|||||.||.||.|||||.|||||||
RBAM_012270__ 951 CTGGGATTTCGTCAATAGTGAAAAGCGCCTTACCAAACCGCTTATCCGGG 1000
BSNT_02062 968 AAGGCGAC-CATTTCCGTGAAGCAGAGTGGGAGGAGGCGTTATTGCTGAT 1016
||||.||| |.||| ||.||.||.||.|||||.||.|||.|...||||||
RBAM_012270__ 1001 AAGGAGACTCGTTT-CGGGAGGCGGAATGGGATGAAGCGCTGCAGCTGAT 1049
BSNT_02062 1017 CGCCAGCAAGTTCACTGAATTAAAAGAGGCGTTT-GGCCCGGATTCTCTC 1065
|||....||.||.||.||..||||||| .|.||| ||||||||..|.||.
RBAM_012270__ 1050 CGCTGATAAATTTACCGATATAAAAGA-ACATTTCGGCCCGGACGCACTT 1098
BSNT_02062 1066 GCTTTTATTACATCTTCTAAATGTACAAATGAAGAATCCTATCTTATGCA 1115
||.|||||.||||||||.|||||.||.|||||||||||.||..|.|||||
RBAM_012270__ 1099 GCCTTTATCACATCTTCCAAATGCACGAATGAAGAATCATACGTGATGCA 1148
BSNT_02062 1116 AAAGCTGGCCAGAGGGGTCATTGGCACAAATAATGTGGACAACTGCTCCC 1165
.|||||.||.||||..|||||.||||||||||||||.|||||||||||.|
RBAM_012270__ 1149 GAAGCTTGCAAGAGCCGTCATCGGCACAAATAATGTCGACAACTGCTCAC 1198
BSNT_02062 1166 GCTATTGCCAATCTCCTGCGACTGCCGGCCTGTTCCGGACAGTCGGCTAT 1215
||||.|||||.|||||.||.||.|||||..|||||.|.||.|||||.||.
RBAM_012270__ 1199 GCTACTGCCAGTCTCCCGCCACGGCCGGATTGTTCAGAACGGTCGGATAC 1248
BSNT_02062 1216 GGCGGTGATTCAGGATCAATTACAGATATCGCGCAAGCGGACCTTGTTTT 1265
||||||||||||||.||.|||||||||||.|...||||.||.||.||..|
RBAM_012270__ 1249 GGCGGTGATTCAGGGTCGATTACAGATATAGAAAAAGCTGAGCTCGTGCT 1298
BSNT_02062 1266 GATTATCGGTTCGAACACGTCTGAGTCGCATCCAGTCTTATCCACTCGCA 1315
||||||||||||.||.|||||||||||.||.||.|||.|.|||||.||||
RBAM_012270__ 1299 GATTATCGGTTCAAATACGTCTGAGTCTCACCCCGTCCTGTCCACACGCA 1348
BSNT_02062 1316 TTAAACGGGCTCATAAGCTAAGAGGGCAGAAAGTGATCGTCGCGGATATC 1365
|||||||..|||||||.||....||.|||||..|..|||||||.||..|.
RBAM_012270__ 1349 TTAAACGTTCTCATAAACTGCACGGACAGAAGCTCGTCGTCGCTGACTTG 1398
BSNT_02062 1366 AGAAAACACGAAATGGCAGAACGCTCCGATTTATTTGTCCAGCCGCGTGC 1415
.|||||||.||||||||.||.|||||||||.|.|||.|||||||||||||
RBAM_012270__ 1399 CGAAAACATGAAATGGCCGAGCGCTCCGATGTGTTTTTCCAGCCGCGTGC 1448
BSNT_02062 1416 CGGATCGGATATCGTCTGGCTGAATGC--GATCGCCAAATATTTAATAGA 1463
||||||.|||||.|||||||||||||| .|||| ||||||.|..|.||
RBAM_012270__ 1449 CGGATCAGATATTGTCTGGCTGAATGCCGTATCG--AAATATCTGCTTGA 1496
BSNT_02062 1464 AAACGGCTAG---------------------------------------- 1473
..|||..|.|
RBAM_012270__ 1497 TCACGATTTGGCGGATACTTCATTTCTGAAGGAGAGAGTGAACGGATTAG 1546
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1547 ATGAATTCGTGAAAAGCCTTGAACCTTATACAATGGAATATGCGGAAAAA 1596
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1597 CATACCGGTGTGGACAAGGATACCCTAATCAAAGTGGCCCGGATGATTCA 1646
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1647 TGAAGCCGGCAGCGTGTGCGCACTGTGGGCGATGGGGGTCACCCAGCATA 1696
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1697 TCGGAGGTAGTGATACGAGCACGGCCATTTCCAACATGCTTCTTGTGACC 1746
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1747 GGAAATTACGGCAAGCCCGGCGCAGGCTCATATCCGCTTCGGGGCCATAA 1796
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1797 TAACGTGCAGGGAGCCAGTGATTTCGGCAGTATGCCTGACAGCTTCCCCG 1846
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1847 GCTATGAAAAAGTAACGGATGAAAAAGCCCGCAAAAAGTATGAACAGGGC 1896
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1897 TGGGGAACAGACCTGCCGAAAGAAATCGGAATGACAAATCATGAAATGAT 1946
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1947 CGAAGGCATCCACTCAGGAAAACTGAAGTCCATGTACTTAAAAGGAGAAG 1996
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 1997 AAATGGGGCTTGTCGACTCCAATATTAACCATGTTCATGCCGCATTTGAA 2046
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2047 AAGCTTGATTTCTTCGTTGTGCAGGATATCTTTCTTTCGCGTACGGCCGA 2096
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2097 GTTCGCCGATGTCGTGCTTCCGGCAAGCCCGAGCCTTGAAAAAGAAGGGA 2146
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2147 CGTTTACGAATACGGAACGGAGGGTGCAGCGCCTTTACGAAGTGTTCGAA 2196
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2197 CCGCTGGGCGATTCAAAGCCTGATTGGCAGATCATTACGGACATCGCCAA 2246
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2247 CCGTCTGGGCGCTGATTGGCACTATGAACATCCGGCAGACATTATGGAAG 2296
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2297 AAGCGGCAATGCTTTCGCCGCTCTACGCAGGCGTCACTTACGAACGTCTC 2346
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2347 GAAGGCTACAATTCACTGCAATGGCCGGTTGCAGCGGACGGAACCGATTC 2396
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2397 ACCGCTTTTATTTACGGATAAGTTCCCGTTTTCAGACGGCAAAGCGATTC 2446
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2447 TATATCCCGTTCAGTGGACCGAGCCGAAAGAATTTGATGAAGAATATGAT 2496
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2497 ATCCATGTGAATAACGGGAGGCTGCTCGAGCATTTTCACGAAGGGAATCT 2546
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2547 GACTTACCGATCAAAAGGAATATCCGAAAAAACGCCGAGTGTGTTCCTTG 2596
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2597 AGGTCTCGCCCGAACTCGCCGAAGAAAGAGGGCTGGAAGACGGAACGCTT 2646
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2647 GTCCGTCTGACATCACCGTACGGAAATGTGAAAGTCAAATGCGTCATCAC 2696
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2697 AGACAGGGTAAAAGGCAAACAAGTCTATCTCCCGATGAACGATTCAAAAG 2746
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2747 ACGCTGCCATTAACCTTTTGACAAGCAGCTATGCGGATAAGGATACCGAT 2796
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2797 ACACCGGCTTATAAAGAAACATCAGCGAAGATGGAGATTTTGAAAAAAGA 2846
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2847 AGGCGTTAATCCGCTTCCGAAAATCAATTTCCGTTACGGAAACCCGCAGC 2896
BSNT_02062 1473 -------------------------------------------------- 1473
RBAM_012270__ 2897 CGCAGATCGGTGTCCGGGTTGATCGGAAATGGGCGCGTAAAGATTATGTA 2946
BSNT_02062 1473 --------------------------------------------- 1473
RBAM_012270__ 2947 TTTCCGGGAGACGCCGTAAAAAGGGGGAAACAGCAAAATGGCTAA 2991
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