Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01882 and RBAM_011220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_01882___argD.1.9828.seq
# -bsequence dna-align/RBAM_011220___argD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01882___argD-RBAM_011220___argD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01882___argD-RBAM_011220___argD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01882___argD
# 2: RBAM_011220___argD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1186
# Identity: 879/1186 (74.1%)
# Similarity: 879/1186 (74.1%)
# Gaps: 56/1186 ( 4.7%)
# Score: 3116.0
#
#
#=======================================
BSNT_01882___ 1 ATGAGCAGCTTGTTTCAAACCTACGGCCGTTGGGATATTGACCTCAAAAA 50
||||||||..|.||||||||||||.||||.|||...||.||..|||||||
RBAM_011220__ 1 ATGAGCAGTCTATTTCAAACCTACAGCCGCTGGCCCATCGATATCAAAAA 50
BSNT_01882___ 51 AGC-AAAGGG--AACGTACGTT---GAGGATCAAAACGGCAAATCATACC 94
||| |||||| || || ||||||.|||||||.|||.|.||.|
RBAM_011220__ 51 AGCGAAAGGGACAA------TTGCAGAGGATGAAAACGGAAAAACGTATC 94
BSNT_01882___ 95 TTGATTTCATTCAGGGGATTGCGGTATCAAATCTAGGACACTGCCATGAA 144
|.|||||.||||||||.||.||.||.||.|||||.||.||.||.|||||.
RBAM_011220__ 95 TCGATTTTATTCAGGGCATCGCCGTTTCCAATCTCGGCCATTGTCATGAT 144
BSNT_01882___ 145 GCGGTGACAGAGGCAGTCAAAAAACAGCTTGACAGCGTATGGCACGTATC 194
|.|||.|||||.|||||.|||.|||||||||||||||||||||||||.||
RBAM_011220__ 145 GAGGTCACAGAAGCAGTGAAAGAACAGCTTGACAGCGTATGGCACGTTTC 194
BSNT_01882___ 195 TAACCTGTTTCAAAACAGTCTCCAAGAGCAAGCGGC-GCAGAAGCTGGCA 243
.||.||||||.||||...|||.||.||..||||.|| ||| |||||.||.
RBAM_011220__ 195 CAATCTGTTTGAAAATGATCTTCAGGAAAAAGCCGCGGCA-AAGCTTGCC 243
BSNT_01882___ 244 GCGCATAGTGCAGGAGATCTTGTCTTTTTCTGCAACAGCGGCGCAGAGGC 293
|..|||||.||.||.|||||.||.||.||||||||||||||.||.||.||
RBAM_011220__ 244 GAACATAGCGCGGGGGATCTCGTTTTCTTCTGCAACAGCGGGGCCGAAGC 293
BSNT_01882___ 294 GAATGAAGGTGCGATAAAGCTTGCCCGAAAAGCAACTGGAAAAACAAAAA 343
|||||||||.||.||.||||||||.||.||||||||.|||||.|||||||
RBAM_011220__ 294 GAATGAAGGCGCCATTAAGCTTGCTCGTAAAGCAACGGGAAAGACAAAAA 343
BSNT_01882___ 344 TCATCACTTTTCTTCAGTCGTTCCATGGCCGCACGTATGCAGGGATGGCT 393
|..|.||.||||.|||.||.||.||.||.||.||.|||||.||||||||.
RBAM_011220__ 344 TTGTAACATTTCATCAATCCTTTCACGGACGGACCTATGCGGGGATGGCC 393
BSNT_01882___ 394 GCGACCGGACAGGATAAAATCAAAACAGGCTTCGGCCCGATGCTTGAAGG 443
||.||||||||.||.||||||||.||.||.|||||.|||||||||.||||
RBAM_011220__ 394 GCCACCGGACAAGACAAAATCAAGACCGGTTTCGGACCGATGCTTCAAGG 443
BSNT_01882___ 444 CTTTCACTACCTGCCATACAATGATCCTTC-----------TGCTTTTAA 482
|||||||||.||.||.|.|||||||||.|| .|||||.||
RBAM_011220__ 444 CTTTCACTATCTTCCGTTCAATGATCCGTCGGCATTCAGCACGCTTTCAA 493
BSNT_01882___ 483 AGCTCTTGGGGAGGAAGGCGATATTGCCGCGGTGATGCTTGAAACAGTGC 532
| .||||| .|||||.|||||.||.||||||||.||.||||
RBAM_011220__ 494 A--------AGAGGA---TGATATCGCCGCCGTCATGCTTGAGACGGTGC 532
BSNT_01882___ 533 AGGGAGAAGGAGGAGTCAAT-CCGGCGAGTGCTGAATTTTTATC--AGCC 579
||||||||||.||||||||| |||.||| |.|.||| ||.||| ||||
RBAM_011220__ 533 AGGGAGAAGGGGGAGTCAATCCCGCCGA-TCCGGAA--TTCATCGAAGCC 579
BSNT_01882___ 580 GTACAGTCGTTTTGCAAGGAAAAGCAAGCCCTTCTCATCATTGATGAAAT 629
.|||||.|.||||||||.||.||.||.||.||.||.|||...||.||.||
RBAM_011220__ 580 TTACAGACATTTTGCAAAGACAAACAGGCGCTGCTTATCGCAGACGAGAT 629
BSNT_01882___ 630 CCAGACCGGCATCGGACGGACGGGAAAAGGC-TTCGCATATGAGCACTTC 678
.||.|||||.|||||.|||||||| .||||| ||||..||||||||.|||
RBAM_011220__ 630 TCAAACCGGAATCGGCCGGACGGG-CAAGGCATTCGGCTATGAGCATTTC 678
BSNT_01882___ 679 GGACTCTCACCGGATATCATCACAGTCGCCAAAGGATTGGGAAACGGCTT 728
||..||||.|||||.||||||||.|..||.|||||..|.||||||||.||
RBAM_011220__ 679 GGCATCTCGCCGGACATCATCACTGCTGCGAAAGGGCTTGGAAACGGTTT 728
BSNT_01882___ 729 TCCGGTCGGCGCTGTCATTGGAAAAAAACAGCTTGGAGAAGCGTTTACCC 778
|||.|||||.||.||.||.||.|||||..||||||||||.||.|||||.|
RBAM_011220__ 729 TCCCGTCGGAGCCGTGATCGGCAAAAAGAAGCTTGGAGACGCCTTTACGC 778
BSNT_01882___ 779 CTGGTTCTCACGGAACGACTTTCGGAGGAAATATGCTGGCGATGGCTGCT 828
|.|||.|.||.||.|||||||||||.||.||||.|||.||.|||||.|||
RBAM_011220__ 779 CGGGTACGCATGGTACGACTTTCGGCGGCAATAAGCTTGCCATGGCAGCT 828
BSNT_01882___ 829 GTGAATGCCACATTGCAAATTGTATTCCAGCCTGACTTTTTGCAAGAGGC 878
|||||.||.||.|||.|.|||||.||.|||||.||||||.|.||.|.|||
RBAM_011220__ 829 GTGAAAGCAACCTTGGATATTGTGTTTCAGCCGGACTTTCTCCAGGCGGC 878
BSNT_01882___ 879 TGCTGATAAAGGGGCGTTTTTAAAAGAACAGCTTGAGGCG-GAGCT-AAA 926
.||.||.|||||..|.||||||||||..|||| |||..|| ||.|| |.|
RBAM_011220__ 879 GGCAGACAAAGGATCATTTTTAAAAGCGCAGC-TGAACCGTGAACTGACA 927
BSNT_01882___ 927 GAGCCCTTTTGTTAAACAAATCCGAGGTAAAGGATTAATGCTTGGAATTG 976
| |.||||||||.|||.|||||||.||.|||||.|||.|..|.||.||||
RBAM_011220__ 928 G-GGCCTTTTGTAAAAGAAATCCGCGGAAAAGGGTTATTAATCGGCATTG 976
BSNT_01882___ 977 AGTGTGATGGCCCGGTTGCTGACATTATTGCTGAATTGCAG--ACATTAG 1024
|.||.|..||.||.||..|.|.|||.||.|..||..||||| || ...|
RBAM_011220__ 977 AATGCGCAGGTCCCGTGTCCGGCATCATCGGAGATCTGCAGGAAC-GCGG 1025
BSNT_01882___ 1025 GCTTGCTTGTATTGCCGGCCGGCCCGAACGTGATTCGGCTGCTGCCGCCG 1074
|||| ||.||..|.||||||||.|||||.||.||..|||||||.||||||
RBAM_011220__ 1026 GCTT-CTCGTGCTTCCGGCCGGACCGAATGTCATCAGGCTGCTCCCGCCG 1074
BSNT_01882___ 1075 CTCACCGTGACTAAGGATGAAATAGCAG-AAGCCGTCAGCAAGCTGAAA- 1122
||.||.||..||.|.||.||||| ||.| ..||||||||.|.|||||||
RBAM_011220__ 1075 CTTACGGTTTCTGAAGAAGAAAT-GCTGTCGGCCGTCAGTATGCTGAAAG 1123
BSNT_01882___ 1123 CAGGCAATCGCTCATCATTCCGCTGTAAACCAGTGA 1158
|| ||.||||.....|||||.||.||.||.|.||.|
RBAM_011220__ 1124 CA-GCGATCGAAGCGCATTCGGCAGTGAAACGGTAA 1158
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