Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01678 and RBAM_010040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01678.1.9828.seq
# -bsequence dna-align/RBAM_010040___yhaZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01678-RBAM_010040___yhaZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01678-RBAM_010040___yhaZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01678
# 2: RBAM_010040___yhaZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1121
# Identity: 402/1121 (35.9%)
# Similarity: 402/1121 (35.9%)
# Gaps: 589/1121 (52.5%)
# Score: 1169.0
#
#
#=======================================
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 1 ATGTCTCTATTAAAAGATATTTATAACGAAGAATTTGCAGAAGCACTTCT 50
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 51 GAACAGAATCAAATCGGCGTATCCGGCTTTTGAGCGGGACAAGTGCCGGG 100
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 101 CGCTGATGTTTCAGGAAGATTGGCCCGGACTGACGTTAAAACAGCGGATG 150
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 151 CGCCGGATCACAGACTCTTTATATGAAACACTGCCGAAGGATTACATACG 200
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 201 GGCGCTTGACGTCTTATATGAGACAGCTCCCCACTTCTCAGGGCTCGCCG 250
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 251 GGATTATTTTTCCCGATTATGTCCAACAGTACGGAACGGATCACTGGGAC 300
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 301 GAATCAATGAAGGCGCTTCAGTATTTCACTCGTTTTTCCACTTCCGAATT 350
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 351 TGCGGTCCGCCCGTATATCAGGCTTGACCGGGAGCGGATGTTCAAAGAGT 400
BSNT_01678 0 -------------------------------------------------- 0
RBAM_010040__ 401 TCCTTTCCTGGACGGAGCATCCGGACGAACATGTCAGAAGGCTTGCCAGC 450
BSNT_01678 1 -------------------------TTGAAATCGGACCCTTCC--CCCGT 23
..|.|||| .||.|||| |.|.|
RBAM_010040__ 451 GAAGGGTCAAGACCGCGCCTGCCATGGGGAATC--TCCATTCCGGCTCTT 498
BSNT_01678 24 ATTGCCGATCCTT----GA-------------GAAGC---TGATGCAGGA 53
.|||.|||||||| || |.|.| ||||||||||
RBAM_010040__ 499 CTTGACGATCCTTCCCCGATTCTCCCTGTTCTGGACCGCTTGATGCAGGA 548
BSNT_01678 54 CGAGTCCTTATATGTAAGAAAAAGCGTGGCCAACAACCTTAATGATATAT 103
.||.||.||||||||.||||||||||||||.||.|||||.|||||.||.|
RBAM_010040__ 549 TGACTCGTTATATGTCAGAAAAAGCGTGGCGAATAACCTGAATGACATCT 598
BSNT_01678 104 CAAAAACGCATCCTCATTTACTGAGAAAAG-TCGCAGATCAATGGTACGG 152
|.|||||.|||||..||.|.||| |.|.|| ||||||...|..|||.|||
RBAM_010040__ 599 CCAAAACACATCCGGATCTTCTG-GCACAGATCGCAGCCGAGCGGTTCGG 647
BSNT_01678 153 AACACATCCCCATACAGACTGGATTATCAAACACGCCTATCGGACCTTAT 202
||....|||.||.||.|||||||||.|.||.|||||||...||||..|.|
RBAM_010040__ 648 AAGCTGTCCGCACACGGACTGGATTTTGAAGCACGCCTGCAGGACACTGT 697
BSNT_01678 203 TAAAAAAGGGGGATAAACAGGC-CTTAGCGCTTTTTGGTTATGAAAATGC 251
||||||..||.||.|||||||| ||| |||.||||.||.|.||||.|.||
RBAM_010040__ 698 TAAAAAGAGGAGACAAACAGGCGCTT-GCGGTTTTCGGGTTTGAAGACGC 746
BSNT_01678 252 ----------TGATTCGATACAAC----TACA-TGATTT----AACATGC 282
|.|||.| ||| |||| |||.|| ||| |.
RBAM_010040__ 747 CTCCCGGATTTCATTGG----AACGTTTTACACTGAATTCGGAAAC--GG 790
BSNT_01678 283 CAGCCCAAACGTATAGTTATTGGCGAAAGCCTTGAATTTTCTTTCTCTAT 332
|.||| ||.||...||||.|..|.|||||||
RBAM_010040__ 791 CCGCC-------------ATCGGAACAAGCATACATTTTTCTT------- 820
BSNT_01678 333 TCATTCAGATAGG--GAT--------CAAAAAGTAAGAATTGAGTACGCA 372
|||||||..| .|| ||||||||.||..||||.|||||.
RBAM_010040__ 821 ---TTCAGATCCGCTCATCCGCCCGGCAAAAAGTCAGGGTTGAATACGCG 867
BSNT_01678 373 ATTGATTTTGTAAAAGCAAGAGGCCAGCGTCATCAG-AAAGTATTTAAAA 421
||||||||||||||...|||.||.||.|| ||.|.| ||.||.|||||.|
RBAM_010040__ 868 ATTGATTTTGTAAAGAAAAGGGGGCACCG-CAGCCGCAAGGTGTTTAAGA 916
BSNT_01678 422 TAACAGAAACAACTATGCGAAAAAAC-GAAACGAAA------TCA-CACA 463
|..|.||..|..|.||| .|.||| ||.|||.|| ||| ||.|
RBAM_010040__ 917 TGTCGGAGTCCGCCATG---GATAACGGAGACGTAAAAGCCTTCAGCAAA 963
BSNT_01678 464 CAAGAATCCAATCCTTTAAGGATTTAACCACCAGAAAGCATTACAAAGGA 513
|| .||.|||.||||.||||||||||||.|.||||||||....|||
RBAM_010040__ 964 CA-----TCATTCCCTTAAAGATTTAACCACCCGCAAGCATTATCGGGGA 1008
BSNT_01678 514 ATTCATACATTATCAGTGATCATCAATGGAGAGGTAAAAGATTCATTGGA 563
|||||.||..|.||.||.|||||.||.|||..||||||||.|||..|.||
RBAM_010040__ 1009 ATTCACACTCTGTCTGTCATCATTAACGGAACGGTAAAAGGTTCGCTTGA 1058
BSNT_01678 564 TTTCCAAGTT-TGCTGA---- 579
||| || ||.|||
RBAM_010040__ 1059 TTT-----TTCTGTTGAATAA 1074
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