Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01676 and RBAM_010020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01676___yheB.1.9828.seq
# -bsequence dna-align/RBAM_010020___yheB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01676___yheB-RBAM_010020___yheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01676___yheB-RBAM_010020___yheB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01676___yheB
# 2: RBAM_010020___yheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1201
# Identity: 819/1201 (68.2%)
# Similarity: 819/1201 (68.2%)
# Gaps: 134/1201 (11.2%)
# Score: 2684.5
#
#
#=======================================
BSNT_01676___ 1 ATGGGTATTGCAGGAACCTTTATTTTTATGATCGTGATCGGCGCTGCCAT 50
|||||.||.||||||||.|||.|.||||||||.||||||||.||.||.||
RBAM_010020__ 1 ATGGGCATAGCAGGAACGTTTCTATTTATGATTGTGATCGGAGCCGCGAT 50
BSNT_01676___ 51 TGGAGCGGTGACCAATCATTTAGCAATTCAAATGCTGTTTAGGCCGTATA 100
.||.||||||||.||||||.|.||.|||||.|||.|.|||.|.|||||..
RBAM_010020__ 51 CGGCGCGGTGACGAATCATCTTGCCATTCAGATGTTATTTCGTCCGTACC 100
BSNT_01676___ 101 AAGCGTACTATTTGTTTGGGAAGCGAGTTCCTTTTACGCCCGGGCTGATT 150
...||||.||..||||.||.||.||.|||||.||||||||.||||||||.
RBAM_010020__ 101 GGCCGTATTACCTGTTCGGAAAACGGGTTCCGTTTACGCCGGGGCTGATC 150
BSNT_01676___ 151 CCAAGACGGCGAGATGAACTTGCAAAACAAATGGGACTGATGGTAGTC-A 199
||.|.|.||||.||||||.|.||||||||||||||.||.||||| |.| |
RBAM_010020__ 151 CCGAAAAGGCGGGATGAATTGGCAAAACAAATGGGGCTCATGGT-GACGA 199
BSNT_01676___ 200 ATCATCTCTTAACCCCTGAAGGCATTAAAAAGCGGCTCGTCTCTGATGCA 249
|.||.||.||||||||.|||||.||.|||||||||||..|.||.|||.|.
RBAM_010020__ 200 ACCACCTTTTAACCCCGGAAGGAATAAAAAAGCGGCTTTTATCAGATACC 249
BSNT_01676___ 250 GCCAAAACGCAGGCTCTTCGAGTGGGGGAACAGCTGATT----CAAAAGC 295
|..||||..|||||.||||...|.|..||||| ||| |||||..
RBAM_010020__ 250 GTTAAAAACCAGGCGCTTCTTTTCGCCGAACA----ATTCACACAAAAAA 295
BSNT_01676___ 296 TGTCACTTTCTGAAGTGACAGTAAAAGAAGC----GCTTGAAAAAGCCG- 340
||.|...|||.||..||||.||..|.||||| ||| ||||
RBAM_010020__ 296 TGGCCGCTTCCGAGATGACGGTGCACGAAGCTTTGGCT-------GCCGC 338
BSNT_01676___ 341 -GG----ATGAAGCGCCCCGAAAAAGCTGCTGATGCATGGATCAGCAGCT 385
|| .||||.| |.|.|.||||| .|.|||||.|||||...|.|.|
RBAM_010020__ 339 AGGCATCCTGAATC-CGCAGGAAAAG--ACGGATGCCTGGATTGACCGTT 385
BSNT_01676___ 386 GGACCGATGATAAGCT----GAATGAGCTTTTCCGCCAATACGGGCACCA 431
..||||||||.||||| ||| ||.|.|||..||||.|.|||||.
RBAM_010020__ 386 TTACCGATGAAAAGCTTTCGGAA----CTGTACCGGAAATATGAGCACCG 431
BSNT_01676___ 432 ATCGTTAAAAGAGCTGG-TGCCT-ATAGAGGTGCAGGAAAAGCTTGAAGA 479
..|..||||||| |||| |.||| || |||.|.|||||||||||.||.||
RBAM_010020__ 432 CGCCATAAAAGA-CTGGCTTCCTGAT-GAGCTTCAGGAAAAGCTGGATGA 479
BSNT_01676___ 480 AAAGATTCCGATGATTTCAGGATATATATTGTCA--CGGAG---TGTCCG 524
|||..|.|||.||....|| ||| ||||||.|.| ||||| || .
RBAM_010020__ 480 AAAAGTCCCGTTGGCCGCA-GAT-TATATTCTGAAGCGGAGCACTG---A 524
BSNT_01676___ 525 TTATTTTGAAAGTGATGAAGGAAAAATCCGTCTTGGCAATATGATTGATG 574
|||||||||.||.||.|||||.|||..|.|.||.||.|||||||||||.|
RBAM_010020__ 525 TTATTTTGAGAGCGAAGAAGGGAAAGACAGGCTCGGAAATATGATTGACG 574
BSNT_01676___ 575 ACTTTTTAAAAGAGCGCGGCATGCTTGGAAGCATGGTGCAAATGTTTCTT 624
|||||||.||....||.||.|||||.||.|||||||||||.|||||.||.
RBAM_010020__ 575 ACTTTTTGAATTCCCGGGGGATGCTCGGCAGCATGGTGCAGATGTTCCTC 624
BSNT_01676___ 625 GGCAATTCAAGCCTTGCGGATCGCGTGCTGCCGGAGCTGCTGAAATTCTT 674
||||||||||||.|.||.||.||.||||||||.||||||.|.||.||.||
RBAM_010020__ 625 GGCAATTCAAGCTTGGCAGACCGTGTGCTGCCTGAGCTGTTAAAGTTTTT 674
BSNT_01676___ 675 GCGCAATGAGGAAACAAATAAATTGCTTTCTGATC-----TCTTAAAAAA 719
|||||||||||||||.||.||..|.||..|||||| |||.||
RBAM_010020__ 675 GCGCAATGAGGAAACGAAAAAGCTTCTGGCTGATCTGCTTTCTCAA---- 720
BSNT_01676___ 720 CGAATGGGGCAAGCTGAGGGAGTATACGTTTAATGAAGCAGATGAAAAAT 769
||||||||||||||.|.....|||||..||.||||.||.||||||||.|
RBAM_010020__ 721 -GAATGGGGCAAGCTCAAATCTTATACACTTTATGAGGCCGATGAAAAGT 769
BSNT_01676___ 770 GGAATGCAAAGGCGCTCATTTTCAGTTTGAAACGAAGAGTGCT---GCAA 816
|||||||.||.|..||..|.|||||..||||| |||.|.||| || .
RBAM_010020__ 770 GGAATGCGAAAGATCTGCTGTTCAGCATGAAA--AAGCGGGCTTTGGC-C 816
BSNT_01676___ 817 GCATTTTCGACTGC-CCCTTTCTTCGACAATACGATTGGCACGCTTAC-- 863
|||.||...||.|| |||||| |||| |||.| .|||.||.|.||
RBAM_010020__ 817 GCACTTCAAACCGCGCCCTTT-TTCG--AATGC---CGGCTCGGTGACAT 860
BSNT_01676___ 864 ---CGTCCGCTATGAATCTGAGCTGAC---------CCAGCAAATGCTGC 901
|..|||.||||||...|||.|.|| |..||..|.|||||
RBAM_010020__ 861 CATCTCCCGTTATGAAGGGGAGATTACGGGAACGTACGCGCCGAAGCTGC 910
BSNT_01676___ 902 ------CGGCACT-----GTTAGACAAATTGC-------TTGAAGGGATT 933
||||||| || ||||| |||.|||
RBAM_010020__ 911 TTGATGCGGCACTCGGCAGT-------ATTGCCGCTCATTTGGAGG---- 949
BSNT_01676___ 934 TCGTCCAACCTTGAAAGTGTCTTAAAACGGTTGCGTCTTGAGGAAATCGT 983
.|||..|.||||||.||||||||||||||.|.||
RBAM_010020__ 950 ----------------ATGTGCTGAAACGGCTGCGTCTTGAGGAAGTGGT 983
BSNT_01676___ 984 CAAGGAGCAGGTGGATCAGTTCCCGGTGGAGCGTCTTGAAGAAATGGTGC 1033
|||.||||||||.||||||||.||.||.||.||.||.||.||||||||||
RBAM_010020__ 984 CAAAGAGCAGGTTGATCAGTTTCCCGTTGAACGGCTGGAGGAAATGGTGC 1033
BSNT_01676___ 1034 TGTCCATTTCAAAAAAAGAATTTAAAATGATTACCTATTTGGGGGGCCTT 1083
||||.|||||.||.|.|||||||||.|||||.||.|||||.||.||.||.
RBAM_010020__ 1034 TGTCGATTTCCAAGAGAGAATTTAAGATGATAACGTATTTAGGCGGTCTG 1083
BSNT_01676___ 1084 CTCGGCGGAATTATAGGCGCGATTCAAGCATTGTTTGTCATCCTTTTTTA 1133
||||||||.||.||.||.||.|||||.||.|||||||||||.|||||.||
RBAM_010020__ 1084 CTCGGCGGGATAATCGGAGCAATTCAGGCTTTGTTTGTCATTCTTTTCTA 1133
BSNT_01676___ 1134 A 1134
|
RBAM_010020__ 1134 A 1134
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