Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01610 and RBAM_009610

See Amino acid alignment / Visit BSNT_01610 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_01610___yhdB.1.9828.seq
#    -bsequence dna-align/RBAM_009610___yhdB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01610___yhdB-RBAM_009610___yhdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01610___yhdB-RBAM_009610___yhdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01610___yhdB
# 2: RBAM_009610___yhdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 246
# Identity:     204/246 (82.9%)
# Similarity:   204/246 (82.9%)
# Gaps:           6/246 ( 2.4%)
# Score: 825.5
# 
#
#=======================================

BSNT_01610___      1 ATGGATTATGCCGATTACGATAAAGCGCTT-TATTACACCCATCGTTCTC     49
                     ||||||.||||||||||.||.||||| ||| ||||||||.||.||.||||
RBAM_009610__      1 ATGGATCATGCCGATTATGACAAAGC-CTTGTATTACACACACCGGTCTC     49

BSNT_01610___     50 AATGGGATAATTTATTAATTTTAATGGTGCGTACAGAGGACGATTTGTTA     99
                     |||||||.|||||.|||||.||.|||||.||||||.|.||.|||||.|||
RBAM_009610__     50 AATGGGACAATTTGTTAATATTGATGGTTCGTACAAAAGATGATTTATTA     99

BSNT_01610___    100 TCAAAACGAATTGAGCATTTTCTGCATGCGTATCATTTTGAACAGGATTA    149
                     |||||.||.||||||||.||||||||.|||||||||||.|||.|.|||.|
RBAM_009610__    100 TCAAAGCGTATTGAGCACTTTCTGCACGCGTATCATTTCGAATATGATCA    149

BSNT_01610___    150 CGCCGT--TTTAGAAAAGATGCTGTATTCCCTTCTCCGTTATATTGATCA    197
                     .||.||  ||.| |||||| |||||||||.||||||.|.|||||||||||
RBAM_009610__    150 TGCGGTGCTTGA-AAAAGA-GCTGTATTCTCTTCTCGGGTATATTGATCA    197

BSNT_01610___    198 TGCCACAGAGCTGACTTATGAAGATCAAATAGCCCTTCTCACATAA    243
                     |||.||||||||..||||||||||||||.|||||.|.||.||||||
RBAM_009610__    198 TGCGACAGAGCTCGCTTATGAAGATCAATTAGCCATGCTGACATAA    243


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