Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01366 and RBAM_008400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_01366___yfiB.1.9828.seq
# -bsequence dna-align/RBAM_008400___yfiB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01366___yfiB-RBAM_008400___yfiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01366___yfiB-RBAM_008400___yfiB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01366___yfiB
# 2: RBAM_008400___yfiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1764
# Identity: 1308/1764 (74.1%)
# Similarity: 1308/1764 (74.1%)
# Gaps: 72/1764 ( 4.1%)
# Score: 4680.0
#
#
#=======================================
BSNT_01366___ 1 ATGCAAAAGGCTTTGTCGTTTTTAAAACCATATTCATTGCTGGCGGGAAT 50
|||..|||||||||.||.|.|.|||||||.|||||..|..||||||||||
RBAM_008400__ 1 ATGTCAAAGGCTTTATCATATGTAAAACCGTATTCTCTTTTGGCGGGAAT 50
BSNT_01366___ 51 TGCGCTGATTCTTATGTTGACGGAGCTTGCAGTTGAACTGATGCAGCCTT 100
.||.|||.||.|.|||.|.|..||||||||.||.||.|||.|.|||||..
RBAM_008400__ 51 CGCTCTGTTTTTCATGCTCATCGAGCTTGCGGTAGAGCTGCTACAGCCCC 100
BSNT_01366___ 101 TATTAATTGCAAAAATCATCGACGATGGGATATTGAAGCAAGATCTGCGG 150
|..|.||.|..||||||||.|||||.||.||.||.|||||.||||| |||
RBAM_008400__ 101 TGCTGATCGGGAAAATCATTGACGAAGGAATTTTAAAGCAGGATCT-CGG 149
BSNT_01366___ 151 CA-TGTATGGATATGGGGCGCGGTCATGATCGGGCTGACCG-TGTTATCC 198
.| .||.|||.|.|||||||..||.||||||||.||||||| |||| ||.
RBAM_008400__ 150 AACGGTTTGGCTGTGGGGCGGCGTGATGATCGGACTGACCGCTGTT-TCA 198
BSNT_01366___ 199 TTTGCGGCGGGGATGCTGAATTCCTTTTATGCCGCCCATGTCAGCCAAAG 248
||.||..||||.||..|.|||||.||.||..|||||||..|||||||.||
RBAM_008400__ 199 TTCGCATCGGGCATTTTAAATTCATTCTACTCCGCCCACATCAGCCAGAG 248
BSNT_01366___ 249 CTTTTCCTATGATACGAGAAAAGGGCTTTTTCAAAAAATCCAGTCCTTCT 298
||.|.|.|||||||||.||||||||||||||||||||||.||.|||||||
RBAM_008400__ 249 CTATGCGTATGATACGCGAAAAGGGCTTTTTCAAAAAATTCAATCCTTCT 298
BSNT_01366___ 299 CCTATTCCACATTTGGACAGTTTTCGTCCTCTTCTTATATTACAAGGCTG 348
|||||||.||.||||..||.||.||.|||.|.||.|.|||.||..|||||
RBAM_008400__ 299 CCTATTCGACGTTTGCGCAATTCTCATCCACATCGTTTATCACCCGGCTG 348
BSNT_01366___ 349 ACAAACGACGTCACACAGGTTCAAAATATGATTTTTATGAGTTTGCGGTT 398
||||||||.||.|||||||||||.||||||.||||.||||||.|.|||||
RBAM_008400__ 349 ACAAACGATGTGACACAGGTTCAGAATATGCTTTTCATGAGTCTCCGGTT 398
BSNT_01366___ 399 TATGCTGCGGGCTCCCTTAATGATTGCAGGCGGCATTGTGCTGTCGCTTG 448
||||||.|||||.||.|||||||||||.||.||||||.|.||.|||||..
RBAM_008400__ 399 TATGCTCCGGGCGCCGTTAATGATTGCGGGGGGCATTATTCTCTCGCTGA 448
BSNT_01366___ 449 CCGTTAATGTGAAACTCGGCTTTTTTCTGCTTGTGACCATTCCGATCCTG 498
||||.||||.|||||||||.|||||||||||..|.||..|.|||||..||
RBAM_008400__ 449 CCGTCAATGCGAAACTCGGGTTTTTTCTGCTGATCACGGTGCCGATTTTG 498
BSNT_01366___ 499 ATCTTGTTTTTGCTATGGGTATTAAGGAAAGGCGGGGCACTGTTCCGCTC 548
.|.|||||||||||.|||||..|.|..|.||||||.||.|||||.||.||
RBAM_008400__ 499 CTTTTGTTTTTGCTGTGGGTGCTGAAAAGAGGCGGCGCGCTGTTTCGGTC 548
BSNT_01366___ 549 AGTGCAGAAAAGGCTGGATCAAGTGAACACCATCATGCAGGAAAATTTAA 598
.|||||.||..||||.|||||.||.|||||.||||||||||||||..|.|
RBAM_008400__ 549 TGTGCAAAAGCGGCTTGATCAGGTCAACACGATCATGCAGGAAAACCTGA 598
BSNT_01366___ 599 TCGCAATCAAGCTGATCAAAGCGCTGCTTCGCGGCAGCCACGAAGTCAAA 648
..||.|||||.|||||.||||||||.||.||.|..|.|||||||||.|||
RBAM_008400__ 599 CGGCGATCAAACTGATTAAAGCGCTCCTCCGTGCAAACCACGAAGTGAAA 648
BSNT_01366___ 649 CGATTTATCAAAGCCAACACAAGGCTGATGGAAAAAACGGTTTCGGCCTT 698
||.|||.|.|||.|.||.||.|.||||||||||||||||||.||.||.||
RBAM_008400__ 649 CGTTTTTTGAAATCGAATACGAAGCTGATGGAAAAAACGGTCTCCGCTTT 698
BSNT_01366___ 699 TCAGCTTGTGGAATTCACGATGCCTGTACTGATGCTTTTGATGAATCTCT 748
||..||.||||||....|||||||..|..|.|||||..|||||||..|.|
RBAM_008400__ 699 TCGTCTCGTGGAAGCGGCGATGCCGATTTTAATGCTGCTGATGAACATTT 748
BSNT_01366___ 749 GTATCCTTTTGATTTTGTGG-GCGGGGTCCTACAGTATTAC---GAGCGG 794
||||..|.||.||.||.||| .|||.| ||.|.||.|||.| |.||||
RBAM_008400__ 749 GTATTTTGTTTATCTTATGGTTCGGCG-CCAAAAGCATTGCTCAGGGCGG 797
BSNT_01366___ 795 AAGCACTCAGGTTGGCGATGTTGTTGCGATAATTAACTACGCAACACGAA 844
| .|.|||||.||||||||.|||.|..|.||||||||.||.||.||.|
RBAM_008400__ 798 A---GCGCAGGTCGGCGATGTCGTTTCCGTCATTAACTATGCGACGCGGA 844
BSNT_01366___ 845 TTACAGGCGCGCTTTCGATGTTTCCGTTTTTGATTATG--ATTTTCACCA 892
|||||||||||||.||..|..||||.|||.|.||.||| ||||| ||.
RBAM_008400__ 845 TTACAGGCGCGCTGTCCGTCCTTCCTTTTCTCATCATGGTATTTT--CCC 892
BSNT_01366___ 893 GGGCGAAGGCTTCAGGGGATAGAATCGGTGAGGTGCTTGAAACAGAAGGC 942
|||||||||||||.||.||.||||||||.||||||||.||||||||||||
RBAM_008400__ 893 GGGCGAAGGCTTCCGGAGAAAGAATCGGCGAGGTGCTGGAAACAGAAGGC 942
BSNT_01366___ 943 GACGAG----CGGG--AGGA--AGGCATCATATTTGATCGTTTGTCAGGA 984
|.|||| |||| |||| .|||| .|..||.||| ||||.
RBAM_008400__ 943 GGCGAGGGAACGGGGCAGGACCCGGCA-------CGGGCGCTTG-CAGGC 984
BSNT_01366___ 985 CAGATTGAGTTTCAGC-ATGTATCCTTTCGCTATCCTGAAATGGACAGAG 1033
..||||||||||| || |.||.|||||.||||||||.|..|||||.|.||
RBAM_008400__ 985 GGGATTGAGTTTC-GCGAAGTGTCCTTCCGCTATCCGGGCATGGAAAAAG 1033
BSNT_01366___ 1034 AAGCGCTCAGGAAT---GTCTCATTTTCCGCAAAGCCAAGAGAAACGATC 1080
|.||||| |.|| ||.||.|||||.||.|..||.|.|||||||.|.
RBAM_008400__ 1034 ACGCGCT---GCATCACGTGTCCTTTTCAGCCAGCCCGAAAGAAACGGTT 1080
BSNT_01366___ 1081 GCGATTCTCGGTGCGACGGGCTCGGGCAAGTCCACGCTTTTTCAGCTCAT 1130
||.|||.|.||.|||||.||.||.||.||.||.||||||||||||||.||
RBAM_008400__ 1081 GCCATTATGGGCGCGACAGGTTCAGGAAAATCAACGCTTTTTCAGCTGAT 1130
BSNT_01366___ 1131 CCCGCGGCTTTATCA-GCCGGATTCAGGCCGCATTTACATAGATGAAAAG 1179
.|||||.||.|| || |.|.|||||.|||.|.||||.||||||.|..||.
RBAM_008400__ 1131 TCCGCGCCTGTA-CACGGCTGATTCGGGCAGTATTTTCATAGACGGCAAA 1179
BSNT_01366___ 1180 C----CGGTTCAAGATATTC-CGGCTGAAGGGCTGCGCAGGCAAATTGGA 1224
| |||| || |||| |.|||...||||||||||||.||||.||.
RBAM_008400__ 1180 CCGATCGGT----GA-ATTCTCCGCTTGCGGGCTGCGCAGGGAAATCGGC 1224
BSNT_01366___ 1225 TATGTACCGCAGGAAGTCCTCTTGTTTTCCGGCACAATCAAAGAAAACAT 1274
|||||.|||||||||||.||..|||||||.|||||.|||...|||||.||
RBAM_008400__ 1225 TATGTTCCGCAGGAAGTGCTTCTGTTTTCAGGCACCATCCGTGAAAATAT 1274
BSNT_01366___ 1275 CGCTTGGGGCAAAGAAAATGCTTCACTAGATGAAATAATGGATGCGGCCA 1324
|||.|||||....||..|||||||||||||||||.|||||||.|||||||
RBAM_008400__ 1275 CGCCTGGGGGCGGGAGGATGCTTCACTAGATGAAGTAATGGAAGCGGCCA 1324
BSNT_01366___ 1325 AACATGCGCAAATTCATGAAACGATTTTGAAGCTCCCAAATGGATATGAC 1374
||.|.||||||||.|||||.||||||.|||||||..||||.|||||.|||
RBAM_008400__ 1325 AAGACGCGCAAATCCATGACACGATTATGAAGCTGTCAAACGGATACGAC 1374
BSNT_01366___ 1375 ACAGTTTTGGGGCAAAGAGGCGTCAACCTGTCCGGCGGCCAAAAACAGCG 1424
||.||..||||.||..|.||||||||..||||.|||||.||.||.|||||
RBAM_008400__ 1375 ACGGTGCTGGGACAGCGGGGCGTCAATTTGTCAGGCGGGCAGAAGCAGCG 1424
BSNT_01366___ 1425 AATTTCCATTGCGCGGGCACTGATTCGAAAACCGGCTATCCTTCTATTAG 1474
.||||||||.|||||.||..|.||..||||.|||.|..||||.||.||||
RBAM_008400__ 1425 GATTTCCATCGCGCGCGCTTTTATCAGAAAGCCGTCCCTCCTGCTGTTAG 1474
BSNT_01366___ 1475 ATGACAGCACAAGCGCGCTTGATCTGCAAACGGAGGCGAAGCTGCTTGAA 1524
|||||||.||.||||||||||||||.||.|||||.||||||||..|..||
RBAM_008400__ 1475 ATGACAGTACGAGCGCGCTTGATCTTCAGACGGAAGCGAAGCTTTTACAA 1524
BSNT_01366___ 1525 GCAATCAGCACATACCATTGCACAACTTTGATCATTACACAAAAAATAAC 1574
||.|||||..|.||..|.|||||.||..||||.|||||||||||||||||
RBAM_008400__ 1525 GCGATCAGATCCTATGAATGCACGACACTGATTATTACACAAAAAATAAC 1574
BSNT_01366___ 1575 CACGGCGATGAAAGCTGATCA-GATTTTGCTGCTTGAGGACGGCGAACTG 1623
.||.|||||||||||||| || .||.||..|||||||.|||||.||||||
RBAM_008400__ 1575 GACTGCGATGAAAGCTGA-CACCATCTTATTGCTTGAAGACGGAGAACTG 1623
BSNT_01366___ 1624 ATTGAAAAAGGCACTCATAGTGAGCTGCTTTCTGCATCTCAGTTATACAA 1673
.|.|..||||||||.||.|..||||||.|..|...||||||..|.|||..
RBAM_008400__ 1624 CTGGCCAAAGGCACGCACAAAGAGCTGATGGCACAATCTCATCTGTACCG 1673
BSNT_01366___ 1674 GCGCATTTACGAGTCACAATTCGGAAGGGAGGGGAGC-GAGTC-ATGCTA 1721
.|..|||||.||.|||||||||||||.||| |||||| || | ||||.|
RBAM_008400__ 1674 ACAGATTTATGAATCACAATTCGGAAAGGA-GGGAGCTGA--CAATGCAA 1720
BSNT_01366___ 1722 A------------- 1722
|
RBAM_008400__ 1721 AAAGACATTCGTAA 1734
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