Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01082 and RBAM_006700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01082___cotA.1.9828.seq
# -bsequence dna-align/RBAM_006700___cotA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01082___cotA-RBAM_006700___cotA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01082___cotA-RBAM_006700___cotA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01082___cotA
# 2: RBAM_006700___cotA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1572
# Identity: 1150/1572 (73.2%)
# Similarity: 1150/1572 (73.2%)
# Gaps: 63/1572 ( 4.0%)
# Score: 4047.0
#
#
#=======================================
BSNT_01082___ 1 ATGACACTTGAAAAATTTGTGGATGCTCTCCCAATCCCAGATACACTAAA 50
|||.||||.||||||||||..||||..||.||.||....||.|||||..|
RBAM_006700__ 1 ATGGCACTGGAAAAATTTGCAGATGAACTGCCGATTATCGAAACACTCCA 50
BSNT_01082___ 51 GC--CAGTACAGCAATCAAAAGAAAAAACATACTACGAAGTCACCATGGA 98
|| ||| .||.|||||.|.|..|..||.||.||.||||||||||||.|
RBAM_006700__ 51 GCCGCAG--AAGAAATCAGACGGCAGCACGTATTATGAAGTCACCATGAA 98
BSNT_01082___ 99 AGAATGCACTCATCAGCTCCATCGCGATCTCCCTCCAACCCGCCTGTGGG 148
.||||||..|||..||||.||.|||||||||||.||.|||||.|||||||
RBAM_006700__ 99 GGAATGCTTTCACAAGCTGCACCGCGATCTCCCGCCGACCCGGCTGTGGG 148
BSNT_01082___ 149 GATACAACGGCTTATTTCCGGGGCCGACCATTGAGGTTAAAAGAAATGAA 198
|.||.|||||.||||||||.||.|||||.||.||.||.||.|.|.|||||
RBAM_006700__ 149 GGTATAACGGTTTATTTCCCGGCCCGACGATCGACGTGAACAAAGATGAA 198
BSNT_01082___ 199 AACGTATATGTAAAATGGATGAATAACCTTCCTTCCACACATTTCCTTCC 248
|||||.|||.|.||||||||||||.||||.||....|..|||||.||.||
RBAM_006700__ 199 AACGTCTATATTAAATGGATGAATGACCTGCCGGATAAGCATTTTCTGCC 248
BSNT_01082___ 249 GATTGATCACACCATTCATCA--CAGTGA-CAGCCAGCATGAAGAGCCCG 295
..|.|||||.||||||||.|| |||..| |.||||.||.||| ||||
RBAM_006700__ 249 CGTAGATCATACCATTCACCATTCAGAAAGCGGCCATCAGGAA---CCCG 295
BSNT_01082___ 296 AGGTAAAGACTGTTGTTCATTTACACGGCGGCGTCACGCCAGATGACAGT 345
|.||.||.||.||.||.|||||||||||.||.|..|||||....|||||.
RBAM_006700__ 296 ATGTCAAAACCGTCGTCCATTTACACGGAGGAGCAACGCCGCCGGACAGC 345
BSNT_01082___ 346 GACGGGTATCCGGAGGCTTGGTTTTCCAAAGACTTTGAACAAACAGGACC 395
|||||.||.|||||.||.|||||..|.||.||.|||.|..||||.||.||
RBAM_006700__ 346 GACGGCTACCCGGAAGCATGGTTCACAAAGGATTTTAAGGAAACGGGTCC 395
BSNT_01082___ 396 TTATTTCAAAAGAGAGGTTTATCATTATCCAAACCAGCAGCGCGGGGCTA 445
||||||..|.||||||||.||.||||||||||||.|.||||||||||||.
RBAM_006700__ 396 TTATTTTGAGAGAGAGGTATACCATTATCCAAACAAACAGCGCGGGGCTC 445
BSNT_01082___ 446 TATTGTGGTATCACGATCACGCCATGGCGCTCACCAGGCTAAATGTCTAT 495
|.||.||||||||||||||||||||||||.|.||.|||||.|||||.||.
RBAM_006700__ 446 TGTTATGGTATCACGATCACGCCATGGCGATTACGAGGCTCAATGTGTAC 495
BSNT_01082___ 496 GCCGGACTTGTCGG--TGCTTATATCATTCATGACCCAAAGGAAAAAC-G 542
|||||.||||.||| || ||||||||||..||.|.|||.|||||.| |
RBAM_006700__ 496 GCCGGGCTTGCCGGGATG--TATATCATTCGCGAGCGAAAAGAAAAGCAG 543
BSNT_01082___ 543 CTTAAAACTGCCTTCAGACGAATACGATGTGCCGCTTCTTATCACAGACC 592
| |.||.||.||.||.|..||.||.||.||.||||||.|.||....||||
RBAM_006700__ 544 C-TGAAGCTTCCCTCCGGAGAGTATGACGTACCGCTTATGATTTTGGACC 592
BSNT_01082___ 593 GCACGATCAATGAGGACGGTTCTTTGTTTTATCCAAGCGCACCGGAAAAC 642
||||..|.|||||.||||||||.||||.||||||.||||.|||.|..|||
RBAM_006700__ 593 GCACATTAAATGACGACGGTTCCTTGTCTTATCCGAGCGGACCTGCTAAC 642
BSNT_01082___ 643 CCTTCTCCG--TCACTGCCTAATCCTTCAATCGTTCCGGCTTTTTGCGGA 690
||| |||| .|.|||||..|.|||||.|||||.|||..||||||||||
RBAM_006700__ 643 CCT--TCCGAAACGCTGCCCGACCCTTCCATCGTCCCGTTTTTTTGCGGA 690
BSNT_01082___ 691 GAAACCATACTCGTCAACGGGAAGGTATGGCCATACTTGGAAGTCGAGCC 740
.|.|||||.||||||||.||.||.|..|||||.||..|||||||.||.||
RBAM_006700__ 691 AATACCATTCTCGTCAATGGTAAAGCGTGGCCGTATATGGAAGTTGAACC 740
BSNT_01082___ 741 AAGGAAATACCGATTCCGTGTCATCAACGCCTCCAATACAAGAACCTATA 790
..|||.|||.||.|||||..||.|.||.|||||||||||.|||||.|.|.
RBAM_006700__ 741 TCGGACATATCGTTTCCGCATCCTTAATGCCTCCAATACGAGAACATTTT 790
BSNT_01082___ 791 ACCTGTCACTCGATAATGGCGGAGAGTTTATTCAGATTGGTTCAGATGGA 840
..||.||.|||.||||.|||||..|||||||.||.||.|||||.||.||.
RBAM_006700__ 791 CTCTCTCGCTCAATAACGGCGGGAAGTTTATCCAAATCGGTTCTGACGGC 840
BSNT_01082___ 841 GGGCTCCTGCCGCGATCTGT-TAAACTGAATTCTTTCAGCCTTGCGCCTG 889
||.||.||.||.||.||||| .||||..|| |||.|||||.|.||.||.|
RBAM_006700__ 841 GGACTGCTTCCCCGCTCTGTCAAAACACAA-TCTATCAGCTTAGCCCCGG 889
BSNT_01082___ 890 CTGAACGTTATGATATCATCATTGACTTCACAGCATATGAAGGAGAATCG 939
|.||.||.||||||.|..||||.||.|||.|.||.|.|||.||||||...
RBAM_006700__ 890 CAGAGCGGTATGATGTGCTCATCGATTTCTCCGCCTTTGACGGAGAACAT 939
BSNT_01082___ 940 ATCATTTTGGCAAACAGCGCGGGCTGCGGCGGTGACGTCAATCCTGAAAC 989
||||||||..|.|||.||.|.||||||||.||.||||.|.||||.||.||
RBAM_006700__ 940 ATCATTTTAACGAACGGCACCGGCTGCGGGGGCGACGCCGATCCGGATAC 989
BSNT_01082___ 990 AGATGCGAATATCATGCAATTCAGAGTCACAAAACCATTGGCACAAAA-- 1037
|||.||.|||.|.|||||||||.|.|||||||||||..|| ||
RBAM_006700__ 990 AGACGCCAATGTGATGCAATTCCGCGTCACAAAACCGCTG------AAGG 1033
BSNT_01082___ 1038 ----AGACGAAAGCAGAAAGCCGAAGTACCT--------CGCCTCATACC 1075
||||..||||.|.|||||.||.||.|| .||||.||
RBAM_006700__ 1034 GAGCAGACACAAGCCGGAAGCCTAAATATCTTTCAACAATGCCTAAT--- 1080
BSNT_01082___ 1076 CTTCGGT-ACAGCATGAA-AGAATACAAAACATCAGAACGTTAAAACTGG 1123
|| |||.|| || ||||||||.||.|||||.|.|.|.|||||..
RBAM_006700__ 1081 -----GTGACATCA--AAGAGAATACACAATATCAGGATGCTTAAACTCA 1123
BSNT_01082___ 1124 CAGGCACCCAGGACGAATACGGCAGACCCGTCCTTCTGCTTAATAACAAA 1173
||...||.||.|||.||||||||.|.|||||..|...|||.||||||||.
RBAM_006700__ 1124 CAAATACGCAAGACAAATACGGCCGGCCCGTTTTGACGCTGAATAACAAG 1173
BSNT_01082___ 1174 CGCTGGCACGATCCCGTCACAGAAGCACCAAAAGTCGGCACAACTGAAAT 1223
||.|||||.|||||.||.||||||||.||.||..||||||||||.|||||
RBAM_006700__ 1174 CGATGGCATGATCCTGTGACAGAAGCGCCGAAGCTCGGCACAACGGAAAT 1223
BSNT_01082___ 1224 ATGGTCCATTATCAACCCGACACGCGGAACACATCCGATCCACCTGCATC 1273
.|||||.||||||||.||||...|.|||||.||||||||.||||||||.|
RBAM_006700__ 1224 CTGGTCGATTATCAATCCGATGGGGGGAACCCATCCGATACACCTGCACC 1273
BSNT_01082___ 1274 TAGTCTCCTTCCGTGTATTAGACCGGCGGCCGTTTGATATCGCCCGTTAT 1323
|.||.|||||||...|..|.||||||||.||.|||||..|.|..||||||
RBAM_006700__ 1274 TTGTTTCCTTCCAAATCCTTGACCGGCGCCCTTTTGACTTAGAGCGTTAT 1323
BSNT_01082___ 1324 CAAGAAA-GCGGGGA-ATTGTCCTATACCGGTCCGGCTGTCCCGCCGCCG 1371
||.||| .|||.|| ||||| .|||||.||.||.||.||||||||.||.
RBAM_006700__ 1324 -AACAAATTCGGCGACATTGT-GTATACAGGCCCCGCCGTCCCGCCTCCT 1371
BSNT_01082___ 1372 CCAAGTGAAAAGGGCTGGAAAGACACCATTCAAGCGCATGCAGGTGAAGT 1421
||||||||.||.|||||||||||.|||.|.||.|||||..|.||.||.||
RBAM_006700__ 1372 CCAAGTGAGAAAGGCTGGAAAGATACCGTGCAGGCGCACTCGGGAGAGGT 1421
BSNT_01082___ 1422 CCTGAGAATCGCGGCGACATTCGGTCCGTACAGCGGACGATACGTATGGC 1471
|.|.||||||||||||||.||||.|||.|||||||||||.||||||||||
RBAM_006700__ 1422 CATCAGAATCGCGGCGACCTTCGCTCCTTACAGCGGACGCTACGTATGGC 1471
BSNT_01082___ 1472 ATTGCCATATTCTAGAGCATGAAGACTATGACATGATGAGACCGATGGAT 1521
|.||.||||||.||||.||||||||.||.||||||||||||||||||||.
RBAM_006700__ 1472 ACTGTCATATTTTAGAACATGAAGATTACGACATGATGAGACCGATGGAC 1521
BSNT_01082___ 1522 ATAACAGATCCCCA-TAAATAA 1542
.|.||.|||...|| |||
RBAM_006700__ 1522 GTCACGGATAAGCAGTAA---- 1539
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