Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05207 and RBAM_006230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05207___yveA.1.9828.seq
# -bsequence dna-align/RBAM_006230___yveA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05207___yveA-RBAM_006230___yveA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05207___yveA-RBAM_006230___yveA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05207___yveA
# 2: RBAM_006230___yveA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1574
# Identity: 1220/1574 (77.5%)
# Similarity: 1220/1574 (77.5%)
# Gaps: 22/1574 ( 1.4%)
# Score: 4704.0
#
#
#=======================================
BSNT_05207___ 1 ATGTCTAAACAAGGAAATTTTCAAAAATCAATGTCGCTGTTTGATCTGAT 50
||||||||.||||||||.||.||.|||.|.|||||.||.||||||||.||
RBAM_006230__ 1 ATGTCTAAGCAAGGAAACTTCCAGAAAACTATGTCACTTTTTGATCTTAT 50
BSNT_05207___ 51 TTTGATTGGGATGGGAGCCATCTTTGGATCAGCGTGGCTGTTCGCTGTCA 100
|||.||.||.|||||||||||.||.||.||.||.||||||||.||.||||
RBAM_006230__ 51 TTTAATCGGCATGGGAGCCATATTCGGTTCGGCATGGCTGTTTGCCGTCA 100
BSNT_05207___ 101 GTAATGTCGCTTCAAAAGCAGGGCCCTCCGGCGCTTTTTCCTGGATCCTC 150
||||.|||||.||.|||||.||.||.||.||||.||||||||||.|..||
RBAM_006230__ 101 GTAACGTCGCCTCTAAAGCGGGTCCATCAGGCGTTTTTTCCTGGCTGATC 150
BSNT_05207___ 151 GGAGGAGCCATTATTTTGTTAATCGGGCTCGTATATGCAGAGCTCGGAGC 200
||.||.|..||.||.||.||.|||||..|.||.|||||.||.||.||.||
RBAM_006230__ 151 GGCGGGGGAATCATCTTATTGATCGGCTTGGTTTATGCGGAACTGGGCGC 200
BSNT_05207___ 201 CGCTCTGCCCCGTACCGGAGGCATCATTCGATACCCCGTTTATTCACATG 250
|||.|||||.||.|||||.||.||.||.||.||.|||||.||||||||.|
RBAM_006230__ 201 CGCGCTGCCGCGGACCGGGGGAATTATCCGGTATCCCGTATATTCACACG 250
BSNT_05207___ 251 GCCACCTTGTCGGCTACTTAATTTCGTTTGTCACGATTGTCGCTTATACA 300
|.|||||.|||||.||.||||||||.||||||||.|||||.||.||.||.
RBAM_006230__ 251 GACACCTCGTCGGATATTTAATTTCCTTTGTCACCATTGTGGCATACACG 300
BSNT_05207___ 301 AGCTTGATTTCAATTGAAGTGACAGCTGTGCGCCAGTATGTGGCCTATTG 350
|||.|.|||||.||.|||||.||.||.||.|||||.||.|||||.|||||
RBAM_006230__ 301 AGCCTTATTTCTATAGAAGTCACGGCAGTCCGCCAATACGTGGCGTATTG 350
BSNT_05207___ 351 GTTTCCCGGCCTGACCATTAAAGGGTCTGATTCGCCGACCATTTCCGGCT 400
|||||||||..|||||.|.|||||.||||||||.|||||.|||.||||.|
RBAM_006230__ 351 GTTTCCCGGTTTGACCGTAAAAGGCTCTGATTCTCCGACAATTGCCGGGT 400
BSNT_05207___ 401 GGATCTTGCAATTTGCCCTATTATGCTTGTTTTTCCTGCTGAATTATTGG 450
||||.|||||||||||.||..|.|||.||||.|||||.||.|||||.|||
RBAM_006230__ 401 GGATATTGCAATTTGCGCTGCTCTGCCTGTTCTTCCTCCTCAATTACTGG 450
BSNT_05207___ 451 AGCGTCAAAACCTTCGCTAAGGCGAATTTCATCATATCGATTTTTAAATA 500
||.|||||||||||.||.||.||.||.|||||.||.||||||||||||||
RBAM_006230__ 451 AGTGTCAAAACCTTTGCGAAAGCAAACTTCATTATTTCGATTTTTAAATA 500
BSNT_05207___ 501 TATTGTGCCGATTACCATCATTATTGTGCTGATCTTTCATTTTCAGCCGG 550
|.|.||.||||||||..|.|||.|.||.|||||.|||||||||||.||||
RBAM_006230__ 501 TGTCGTACCGATTACGGTAATTGTGGTACTGATTTTTCATTTTCACCCGG 550
BSNT_05207___ 551 AGAATTTATCCGTTCAAGGATTTGCACCGTTTGGATTTACAGGTATTCAG 600
..|||.|..|||||||.|||||.||.||.|||||.||.||.||.||||||
RBAM_006230__ 551 GCAATATGACCGTTCACGGATTCGCGCCTTTTGGTTTCACCGGAATTCAG 600
BSNT_05207___ 601 GCTGCCATCTCGACAGGCGGCGTCATGTTTGCGTATCTCGGCCTGCACCC 650
||.||.||.||.||||||||||||||||||||.||.||.||.|||||.||
RBAM_006230__ 601 GCCGCGATTTCCACAGGCGGCGTCATGTTTGCATACCTTGGGCTGCATCC 650
BSNT_05207___ 651 GATTGTATCTGTAGCAGGTGAAGTCCAAAATCCAAAACGCAATATCCCGA 700
||||||..||||.||..|||||||.||.|||||.||.||.||.||.||||
RBAM_006230__ 651 GATTGTGGCTGTCGCGAGTGAAGTGCAGAATCCGAAGCGGAACATTCCGA 700
BSNT_05207___ 701 TCGCTTTAATCATTTGCATCATCGTTTCAACCATCATTTATACTGTTTTG 750
||||.||.||..|.||.||.||||||||.||.||.|||||.||.||..||
RBAM_006230__ 701 TCGCATTGATTGTCTGTATTATCGTTTCTACTATTATTTACACCGTGCTG 750
BSNT_05207___ 751 CAGGTCACCTTTATTGGTGCAATCCCGACAGAAACACTGAAACATGGCTG 800
|||.||||.|||||.||.||.||||||.|.||.||.|||||.||.||.||
RBAM_006230__ 751 CAGCTCACTTTTATCGGGGCGATCCCGGCGGATACCCTGAAGCACGGATG 800
BSNT_05207___ 801 GCCGGCAATTGGCCGG----GAGTTCTCATTGCCGTTTAAGGATATTGCG 846
||||||.|| ||| ||.|||||..|.|||||.||.|||||.||.
RBAM_006230__ 801 GCCGGCTAT----CGGGACTGAATTCTCCCTTCCGTTCAAAGATATCGCC 846
BSNT_05207___ 847 GTCATGCTCGGGTTAGGCTGGCTTGCAACGCTTGTCATTTTAGACGCCAT 896
||..|||||||.||.||.|||||.||.||..|.|||||||||||.||.||
RBAM_006230__ 847 GTTTTGCTCGGTTTGGGGTGGCTGGCGACATTGGTCATTTTAGATGCGAT 896
BSNT_05207___ 897 TCTGTCTCCCGGAGGAAACGGGAATATCTTTATGAATACGACATCCCGCC 946
|.|.||.||.||.||.|||||.||||||||||||||||||||.||.||.|
RBAM_006230__ 897 TTTATCACCGGGCGGTAACGGAAATATCTTTATGAATACGACTTCACGTC 946
BSNT_05207___ 947 TTGTTTACGCCTGGGCGCGTAACGGCACATTATTTGGCATATTCTCAAAG 996
|.||.||.||||||||..|.|||||.||||||||..||||.||.||.||.
RBAM_006230__ 947 TCGTCTATGCCTGGGCCAGAAACGGAACATTATTCAGCATTTTTTCTAAA 996
BSNT_05207___ 997 GTCAATAAAGATACGGGGACACCCCGCGCTTCGCTTTGGCTTTCGTTTGC 1046
|||||||||||.||.||||||||.||.||.||.||||||||||||||.|.
RBAM_006230__ 997 GTCAATAAAGAAACCGGGACACCGCGTGCCTCCCTTTGGCTTTCGTTCGG 1046
BSNT_05207___ 1047 CCTGTCCATTTTCTGGACACTTCCCTTTCCTTCGTGGAATGCGCTCGTCA 1096
.|||.|..||||.|||||.|||||.||.|||||.|||||.||.||.||||
RBAM_006230__ 1047 TCTGGCTGTTTTTTGGACGCTTCCGTTCCCTTCTTGGAACGCTCTTGTCA 1096
BSNT_05207___ 1097 ATGTCTGTTCAGTCGCGCTCATTCTTTCATATGCGATTGCACCCATTTCT 1146
|.||.||.||.|||||..|.|||||.||.|||||||||||.||.||||||
RBAM_006230__ 1097 ACGTATGCTCCGTCGCATTGATTCTGTCTTATGCGATTGCGCCGATTTCT 1146
BSNT_05207___ 1147 TCAGCTGCGCTGAGGGTCAACGCGAAGGACTTAAACAGGCCGTTTTATTT 1196
||.||.||||||||.||||||||||||.|..|.|||||.|||||||||||
RBAM_006230__ 1147 TCTGCGGCGCTGAGAGTCAACGCGAAGAATATTAACAGACCGTTTTATTT 1196
BSNT_05207___ 1197 AAAAGGAATGAGTATTATCGGGCCGCTTTCCTTTATATTTACAGCGTTTA 1246
||||||.|||||.||.|||||||||||.||.|||||.|||||..|.|.||
RBAM_006230__ 1197 AAAAGGGATGAGCATCATCGGGCCGCTGTCGTTTATTTTTACCTCTTATA 1246
BSNT_05207___ 1247 TCGTGTACTGGTCAGGATGGAAAACAGTCTCCTGGCTGCTCGGTTCACAG 1296
|.||.||.|||||.||||||...||.||.||||||||.||||||||.||.
RBAM_006230__ 1247 TAGTATATTGGTCCGGATGGCGCACCGTATCCTGGCTTCTCGGTTCTCAA 1296
BSNT_05207___ 1297 CTCGTGATGTTTTTGATCTATCTCTGTTTCAGCAAATATACGCCTAAAGA 1346
.|.||.||||||.|||||||||||||||||||.||||||.|.||.|||||
RBAM_006230__ 1297 ATTGTCATGTTTCTGATCTATCTCTGTTTCAGTAAATATGCTCCCAAAGA 1346
BSNT_05207___ 1347 AGATGTCAGCCT-CGCTCAGCAGCTGAAATCAGCCTGGTGGCTTATCGGG 1395
.|||||||||.| || .|||||||||||||||||.||||||.|..||||.
RBAM_006230__ 1347 TGATGTCAGCATACG-GCAGCAGCTGAAATCAGCATGGTGGATCGTCGGC 1395
BSNT_05207___ 1396 TTTTATATTATGATGCTGATCTTTTCCTACATCGGTTCTTTCGGACATGG 1445
||||||.|.|||||||||||.||.|||||..||||.||.|||||.||.||
RBAM_006230__ 1396 TTTTATGTCATGATGCTGATTTTCTCCTATCTCGGCTCGTTCGGCCACGG 1445
BSNT_05207___ 1446 TTTAGGGATTATCAGCAATCCCGTCGACCTCATTTTAGTCGCGATCGGCT 1495
.||.||.||||||||||||||..|.|||||.|||.|..||||.|||||.|
RBAM_006230__ 1446 ATTGGGCATTATCAGCAATCCGCTTGACCTGATTCTGATCGCCATCGGTT 1495
BSNT_05207___ 1496 CACTTGCGATTTATTACTGGGCAAAGTATACCGGGCTCCCAAAAGC---- 1541
|.||.|..|||||||||||||||||.|||||.||.||.||.||.||
RBAM_006230__ 1496 CGCTCGGTATTTATTACTGGGCAAAATATACGGGTCTGCCGAAGGCTATG 1545
BSNT_05207___ 1542 --CGCCATTGATTACGATAAATAA 1563
||.||.| |||||||.|
RBAM_006230__ 1546 ATCGACAGT------GATAAATGA 1563
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