Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00885 and RBAM_005410
See
Amino acid alignment /
Visit
BSNT_00885 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_00885___ydeB.1.9828.seq
# -bsequence dna-align/RBAM_005410___ydeB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00885___ydeB-RBAM_005410___ydeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00885___ydeB-RBAM_005410___ydeB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00885___ydeB
# 2: RBAM_005410___ydeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 478
# Identity: 440/478 (92.1%)
# Similarity: 440/478 (92.1%)
# Gaps: 17/478 ( 3.6%)
# Score: 2106.0
#
#
#=======================================
BSNT_00885___ 1 ATGGAGGTGGATGATATGTTTCAAATTGGCGATAACATTGTTTATCCAAT 50
|||||||||||||||||||||||||||||||||||
RBAM_005410__ 1 ---------------ATGTTTCAAATTGGCGATAACATTGTTTATCCAAT 35
BSNT_00885___ 51 GCACGGAGCAGGTATAATTGAAGCCATAGAAGAAAAAGAATTCTTAGAGG 100
||||||||||||||.||||||||||||||||||||||.||||||||||||
RBAM_005410__ 36 GCACGGAGCAGGTACAATTGAAGCCATAGAAGAAAAACAATTCTTAGAGG 85
BSNT_00885___ 101 AAAAACAACAGTATTATGTCATAAGAATGTCAATCAGTAATATGACAGTT 150
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_005410__ 86 AAAAACAACAGTATTATGTCATAAGAATGTCAATCAGTAATATGACAGTT 135
BSNT_00885___ 151 ATGATTCCAACGAGTAAAATATTGAGTTCGAATATACGACCAGTTACCGA 200
||||||||||||.||||||||||||||||.||||||||.||||||||.||
RBAM_005410__ 136 ATGATTCCAACGCGTAAAATATTGAGTTCAAATATACGGCCAGTTACTGA 185
BSNT_00885___ 201 TATACTTGCATTAAAACACATTATGCACATTTTTCAGCATGGAGAATCAG 250
|||||.||||||||||||||||||.|||||||||||||||||||||||||
RBAM_005410__ 186 TATACGTGCATTAAAACACATTATACACATTTTTCAGCATGGAGAATCAG 235
BSNT_00885___ 251 ATAGGTTACTGCCATGGAAGCAAAGGTACAAAATAAACACGGACAAAATA 300
|||.|||||||||.||||||||||||||.|.|.||||||||.||||||||
RBAM_005410__ 236 ATAAGTTACTGCCGTGGAAGCAAAGGTATATAGTAAACACGAACAAAATA 285
BSNT_00885___ 301 AAAACAGGTGAAATACAAGAAGGCGCTGAAGTTGTACGTGATTTAATGCG 350
|||||.||||||||||||||||||||||||||||||||||||||||||||
RBAM_005410__ 286 AAAACGGGTGAAATACAAGAAGGCGCTGAAGTTGTACGTGATTTAATGCG 335
BSNT_00885___ 351 TATGAAGAAAGAAAAAGCACTTAATGCAAGCGAAAAAAAAATGCTGGATA 400
.||||||||||||||||||||||||.|||||||||||||||||.||||||
RBAM_005410__ 336 AATGAAGAAAGAAAAAGCACTTAATTCAAGCGAAAAAAAAATGTTGGATA 385
BSNT_00885___ 401 ATGCATATGAATTTTTGATTAGTGAACTGGAAGTAATTAAAGGAATCACT 450
||||||||||||||||||||||||||||||||||.|||||||||||||||
RBAM_005410__ 386 ATGCATATGAATTTTTGATTAGTGAACTGGAAGTCATTAAAGGAATCACT 435
BSNT_00885___ 451 GAAAAACAAATAAAAAGTTT-TGGTTAG 477
|||||||||||||||||||| ||.|.|
RBAM_005410__ 436 GAAAAACAAATAAAAAGTTTCTGCTAA- 462
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.