Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05589 and RBAM_005320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:05
# Commandline: needle
# -asequence dna-align/BSNT_05589___ywnB.1.9828.seq
# -bsequence dna-align/RBAM_005320___ywnB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05589___ywnB-RBAM_005320___ywnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05589___ywnB-RBAM_005320___ywnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05589___ywnB
# 2: RBAM_005320___ywnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 670
# Identity: 446/670 (66.6%)
# Similarity: 446/670 (66.6%)
# Gaps: 59/670 ( 8.8%)
# Score: 1312.5
#
#
#=======================================
BSNT_05589___ 1 ATGAAAATTGGTATTATAGGCGCAAGCGGGAAAGCGGGAAACGAG----A 46
.||||||||||.||.||.||.||||.|||.|||||.||| || |
RBAM_005320__ 1 TTGAAAATTGGAATCATTGGTGCAACCGGAAAAGCTGGA----AGTCTTA 46
BSNT_05589___ 47 TTTTGAAAGAAGC-GAAAACAAGAGACCATGAAGTGACAGCCATCGTCAG 95
|.||||||||||| |.||.||.|.|| ||||||||.||.||.||.||.||
RBAM_005320__ 47 TCTTGAAAGAAGCGGTAAGCAGGGGA-CATGAAGTAACTGCAATTGTAAG 95
BSNT_05589___ 96 AAACGCTTCAAAAGTGCAGGAGCAGGACGTAGCGGTTTTGGAGAAAGATG 145
|.|.|||.|||||.|..|.|||.|..|..|.||.||..|.||.|||.||.
RBAM_005320__ 96 AGATGCTGCAAAACTTAAAGAGGAAAAGATTGCAGTCATTGAAAAAAATA 145
BSNT_05589___ 146 TGTTTGAACTGACTGTGGAAGACATC-----AAGCCTTTCGACGCGGTCG 190
|..||||.||.||...|||.| ||| ||| ||.||.|..|..|
RBAM_005320__ 146 TAATTGATCTTACATCGGATG--ATCTAAAAAAG---TTAGATGTAGCAG 190
BSNT_05589___ 191 TAAACGCTTTTGGAGCAGCACCCGGCCAAGAACATCTTCATGTTGAAGCA 240
|.||.||.||.||.||..||...||..|||||||....|||||.||.||.
RBAM_005320__ 191 TTAATGCCTTCGGTGCTCCATTAGGAGAAGAACAGGCACATGTAGATGCT 240
BSNT_05589___ 241 GGAAGAGCACTCATCA--GCATTTTAAAGGACGCGAAGCACACAAGATTG 288
||..|.|||.|.||.| ||| ||.|||||| |.|.|.|||||| |
RBAM_005320__ 241 GGCCGGGCATTAATTAGGGCA-TTAAAAGGA----ACGGATACAAGA--G 283
BSNT_05589___ 289 C--TTGTTGTTGGCGGAGCGGGAAGCCTGTTTGTTGATGAAGCCAAAACA 336
| |..||||.||.|||||.||.||.||.|.|||.||.|||...|||||.
RBAM_005320__ 284 CCGTAATTGTAGGTGGAGCAGGGAGTCTTTATGTAGACGAAAATAAAACT 333
BSNT_05589___ 337 ACCCGTTTAATGGATACGCCGGAATTTCCGAAAGAATATT-TGCCAACTG 385
..|.||.||||||||||.||.| ||||||...|||.|.|| |.||.||.|
RBAM_005320__ 334 GTCAGTGTAATGGATACACCTG-ATTTCCCGGAGATTTTTATTCCGACAG 382
BSNT_05589___ 386 CATCAAA--TCAAGG-CGAGAACCTGAAAGATTTGCAGCAGACAGACTCC 432
| |||| .||||| || .|||.||.||||..|..|| .|.|||.|
RBAM_005320__ 383 C--CAAAGGGCAAGGTCG-TAACTTGCAAGAACTAAAG----GAAACTTC 425
BSNT_05589___ 433 ----ATTTCCTGGACGTTCCTCAGTCCTGCGGCATTTTTTGATCCAG-CA 477
|||..||||||.||..||||||||.|.||..|.|||||.|||| |.
RBAM_005320__ 426 TGATATTAACTGGACATTTATCAGTCCTTCAGCGGTATTTGACCCAGACG 475
BSNT_05589___ 478 GGAAAACGGACTGGCTCTTACCAAAAAGGAAAAGACAATGTCATC----- 522
|||||| |.|||||.|.|||.||...||||||||| |||||
RBAM_005320__ 476 GGAAAA-GAACTGGATTTTATCAGTCAGGAAAAGA-----TCATCTTCTT 519
BSNT_05589___ 523 GTAAATGCAAAAGGCGGCAGCTATATCAGCTATGCAGATTATGCCATTGC 572
||.|||.|.|||||||..||.|||||||||||||||||.|||||.|||||
RBAM_005320__ 520 GTGAATTCGAAAGGCGAAAGTTATATCAGCTATGCAGACTATGCAATTGC 569
BSNT_05589___ 573 CGTGTTGGACGAGCTTGAACATCCCGAACACAAAAATGAACGCTTCACAG 622
.||.|||||.||..|.|||.||||..||||.|.||||||||||||.||||
RBAM_005320__ 570 AGTATTGGATGAAATCGAAAATCCAAAACATATAAATGAACGCTTTACAG 619
BSNT_05589___ 623 TGGTAAGCGAAGCGGAATAA 642
|.||..|.|||||.||||||
RBAM_005320__ 620 TTGTTGGAGAAGCTGAATAA 639
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