Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00750 and RBAM_004650

See Amino acid alignment / Visit BSNT_00750 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_00750___ydaQ.1.9828.seq
#    -bsequence dna-align/RBAM_004650.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00750___ydaQ-RBAM_004650.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00750___ydaQ-RBAM_004650.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00750___ydaQ
# 2: RBAM_004650
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 284
# Identity:     192/284 (67.6%)
# Similarity:   192/284 (67.6%)
# Gaps:          31/284 (10.9%)
# Score: 626.0
# 
#
#=======================================

BSNT_00750___      1 ATGATGTCAGTATTTATTCTGTTTTATTTGTGGATTGTTCCTATCGTTAT     50
                        ||||||||||||||.||.||||||.||||||||||.||.||.||.||
RBAM_004650        1 ---ATGTCAGTATTTATCCTTTTTTATCTGTGGATTGTGCCGATTGTCAT     47

BSNT_00750___     51 CGGCATTTTATGTTCTGTTGCTGCCCATAGATCCAAGG----GAAAAATG     96
                     ||||||.||.||||||.||..|||..||.|..|.|.||    ||||..|.
RBAM_004650       48 CGGCATCTTCTGTTCTCTTATTGCTTATCGGACAACGGGTAAGAAACGTC     97

BSNT_00750___     97 AGAGTCGCGCCCGGCATTGCCATGATCGTGCTCAGTATTATTTCCCTAAT    146
                     .||.|    ||||||.||...|||||||...|.||.||..|||||.||||
RBAM_004650       98 TGATT----CCCGGCTTTTTGATGATCGCATTAAGCATCGTTTCCTTAAT    143

BSNT_00750___    147 CACGGCGTTT----ACGGCCGG----ACACACAAATTTCCACGTGTTTAT    188
                     |||||.|.||    .||||.||    ||        |..||.|||||.||
RBAM_004650      144 CACGGGGCTTTGGATCGGCGGGGTGAAC--------TATCATGTGTTCAT    185

BSNT_00750___    189 CGGCGGCATGTTTTTATTCGGCACCTTCTTGGTCGGTTCTGCTTTTCCTT    238
                     |||.|||||||||||||||||.||.||.||||.|||.||.||.||.||.|
RBAM_004650      186 CGGGGGCATGTTTTTATTCGGTACGTTATTGGCCGGCTCCGCCTTCCCGT    235

BSNT_00750___    239 TCTTCTTCGGGC--TGAAGAAAAAAGAGAAATAA    270
                     |.|||||||..|  |.|.| .|||.|| ||||||
RBAM_004650      236 TTTTCTTCGCTCTTTCACG-CAAACGA-AAATAA    267


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