Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00741 and RBAM_004480
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00741___topB.1.9828.seq
# -bsequence dna-align/RBAM_004480___topB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00741___topB-RBAM_004480___topB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00741___topB-RBAM_004480___topB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00741___topB
# 2: RBAM_004480___topB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2212
# Identity: 1764/2212 (79.7%)
# Similarity: 1764/2212 (79.7%)
# Gaps: 53/2212 ( 2.4%)
# Score: 7052.0
#
#
#=======================================
BSNT_00741___ 1 ATGTCAAAAACAGTTGTATTAGCTGAAAAACCTTCAGTCGGCAGGGATTT 50
||||||||||||||||||||||||||||||||||||||||||.||||.||
RBAM_004480__ 1 ATGTCAAAAACAGTTGTATTAGCTGAAAAACCTTCAGTCGGCCGGGACTT 50
BSNT_00741___ 51 AGCCCGGGTGCTGAAGTGCCATAAAAAAGGAAACGGTTATCTCGAAGGCG 100
.|||||.|||||||||||.|||||||||||||||||.|||||.|||||||
RBAM_004480__ 51 GGCCCGCGTGCTGAAGTGTCATAAAAAAGGAAACGGATATCTTGAAGGCG 100
BSNT_00741___ 101 ATCAATATATTGTGACCTGGGCTTTAGGCCATTTGGTGACGCTTGCTGAT 150
|.|..||.||.||.||.|||||..|.||.|||.||||.|||||.|||||.
RBAM_004480__ 101 ACCGCTACATCGTCACATGGGCGCTCGGACATCTGGTAACGCTCGCTGAC 150
BSNT_00741___ 151 CCGGAAGGCTACGGAAAAGAATTTCAATCATGGCGCCTAGAGGATCTGCC 200
||.|||||.|||||.||||||||||||||||||||.||.|||||||||||
RBAM_004480__ 151 CCTGAAGGATACGGCAAAGAATTTCAATCATGGCGGCTTGAGGATCTGCC 200
BSNT_00741___ 201 GATTATCCCAGAACCCTTGAAGCTTGTGGTGATAAAAAAAACCGGAAAGC 250
||||||.||.||.||.||||||||.||.||.||.||||||||.|||||.|
RBAM_004480__ 201 GATTATTCCGGAGCCTTTGAAGCTCGTCGTCATTAAAAAAACAGGAAAAC 250
BSNT_00741___ 251 AGTTCAATGCAGTCAAATCCCAGCTTACCCGTAAAGACGTCAATCAGATT 300
||||||||||.||||||.|.||||||..|||.||||||||||..|||||.
RBAM_004480__ 251 AGTTCAATGCGGTCAAAGCTCAGCTTGTCCGGAAAGACGTCACCCAGATC 300
BSNT_00741___ 301 GTCATCGCGACTGACGCAGGCCGGGAAGGTGAGCTTGTTGCGCGCTGGAT 350
||.|||||.||.||||||||.||||||||.||||||||.||.||||||||
RBAM_004480__ 301 GTAATCGCTACAGACGCAGGACGGGAAGGGGAGCTTGTGGCCCGCTGGAT 350
BSNT_00741___ 351 CATTGAGAAAGCGAATGTCCGAAAACCAATCAAGCGGCTGTGGATTTCAT 400
.||.||.||.||.||.|||||.|||||.||.|||||||||||||||||.|
RBAM_004480__ 351 TATCGAAAAGGCAAACGTCCGCAAACCGATTAAGCGGCTGTGGATTTCCT 400
BSNT_00741___ 401 CTGTGACGGATAAAGCGATCAAGGAAGGTTTTCAAAAGCTGCGCAGCGGC 450
|||||||||||||.|||||.||.|||||.|||||||||||.|||||||||
RBAM_004480__ 401 CTGTGACGGATAAGGCGATTAAAGAAGGATTTCAAAAGCTCCGCAGCGGC 450
BSNT_00741___ 451 AAAGAATATGAAAACCTTTACCATTCTGCCGTCGCCAGAGCGGAAGCGGA 500
|||||.||.||||||||.||.|||||.|||||.|||||||||||||||||
RBAM_004480__ 451 AAAGAGTACGAAAACCTGTATCATTCCGCCGTTGCCAGAGCGGAAGCGGA 500
BSNT_00741___ 501 TTGGATTGTGGGGATCAATGCCACCCGTGCACTTACCACAAAATTCAATG 550
||||||.||.||.|||||.||.|||||.||.||.||.||.|||||.||.|
RBAM_004480__ 501 TTGGATCGTCGGCATCAACGCGACCCGCGCCCTGACGACGAAATTTAACG 550
BSNT_00741___ 551 CCCAGCTCTCATGCGGGCGTGTGCAGACTCCGACGCTTGCCATGATTGCA 600
|.|||||.||||||||.||.||.|||||||||||.||.||.|||||.||.
RBAM_004480__ 551 CACAGCTGTCATGCGGACGCGTCCAGACTCCGACACTGGCGATGATCGCC 600
BSNT_00741___ 601 AAGCGCGAGGCAGACATTCAAGCGTTTACGCCCGTTCCGTATTACGGCAT 650
|||||.||.||.||||||||.|||||.|..||||||||.||||||||..|
RBAM_004480__ 601 AAGCGTGAAGCGGACATTCAGGCGTTCAAACCCGTTCCTTATTACGGTCT 650
BSNT_00741___ 651 CCGTGCTGTAGTCGACGGC-------ATGACGCTGACGTGGCAGGATAAG 693
||||| ||.|||| |||||||||||.|||||||||||.
RBAM_004480__ 651 CCGTG-------CGGCGGCTGATCAGATGACGCTGACATGGCAGGATAAA 693
BSNT_00741___ 694 AAATCAAAGCAGACGAGAACGTTCAATCAAGA-TGTAACAAGCCGTCTGC 742
|||.||||||||||.|||||.|||.||| ||| .||.||..|||||.||.
RBAM_004480__ 694 AAAACAAAGCAGACAAGAACATTCGATC-AGACGGTGACCGGCCGTTTGG 742
BSNT_00741___ 743 TAAAAAATCTCCAAGGAAAGCAAGCGGTCGTAGCTGAGCTGAAAAAAACA 792
.||||.|||||||||||||||..||||||.|..|.||..||||||||||.
RBAM_004480__ 743 CAAAAGATCTCCAAGGAAAGCCGGCGGTCATTTCAGAATTGAAAAAAACG 792
BSNT_00741___ 793 GCGAAAAAAAGCTTTGCGCCTGCGCTTTATGATTTAACGGAGCTGCAGCG 842
|||||.||||||||.||.||.|..|||||.||.||.|||||..|||||||
RBAM_004480__ 793 GCGAAGAAAAGCTTCGCTCCCGGTCTTTACGACTTGACGGAATTGCAGCG 842
BSNT_00741___ 843 TGACGCCCACAAGCGCTTCGGTTTTTCTGCTAAAGAAACGCTTTCTGTCC 892
.|||||.||.||||||||||||||.||.||.|||||.|||||.||.||.|
RBAM_004480__ 843 GGACGCTCATAAGCGCTTCGGTTTCTCCGCAAAAGAGACGCTGTCCGTGC 892
BSNT_00741___ 893 TGCAGAAGCTATATGAGCAGCATAAGCTCGTCACATATCCGCGGACGGAC 942
|.||.|||||.|||||.|||||||||||.|||||.||.|||||||||||.
RBAM_004480__ 893 TTCAAAAGCTGTATGAACAGCATAAGCTTGTCACTTACCCGCGGACGGAT 942
BSNT_00741___ 943 TCTAGATTTTTATCCAGTGACATCATCCCAACGTTAAAAGACCGTCTGGA 992
||.|||||..|.|||...||||||.|.||.||.||||||||||||.|..|
RBAM_004480__ 943 TCCAGATTCCTTTCCGCAGACATCGTGCCGACTTTAAAAGACCGTTTAAA 992
BSNT_00741___ 993 AGGCATGGAAGTAAAACCGTATGCCCAATATGTCAGCCAAATTAAAAAAC 1042
.|||||||||||.||.|||||.||.||.||.||||..|||||....||.|
RBAM_004480__ 993 CGGCATGGAAGTTAAGCCGTACGCACAGTACGTCAATCAAATACTGAAGC 1042
BSNT_00741___ 1043 GCGGCATTAAATCTCATAAAGGATATGTCAATGACGCGAAGGTGTCAGAC 1092
|.|||.|.|||.|.||||||||||..||||||||.|||||.||.||.||.
RBAM_004480__ 1043 GGGGCGTCAAAGCGCATAAAGGATTCGTCAATGATGCGAAAGTATCGGAT 1092
BSNT_00741___ 1093 CACCACGCGATTATCCCGACCGAAGAGCCGCTCGTTC---TCAGCAGTCT 1139
|||||.||.||.||.|||||.||.|||||||| |.|| ||| ||.||
RBAM_004480__ 1093 CACCATGCCATCATTCCGACAGAGGAGCCGCT-GATCCTTTCA--AGCCT 1139
BSNT_00741___ 1140 GAGTGATAAAGAACGAAAGCTGTATGACCTGATTGCGAAACGTTTCCTTG 1189
.||.||.||||||||||||||.||.|||||||||||.||||||||.||.|
RBAM_004480__ 1140 CAGCGACAAAGAACGAAAGCTTTACGACCTGATTGCCAAACGTTTTCTCG 1189
BSNT_00741___ 1190 CTGTATTAATGCCTGCATTCGAATATGAGGAAACAAAGGTCATCGCAGAA 1239
|.||.||||||||.||.||||||||.||.|||||||||||||..||.||.
RBAM_004480__ 1190 CCGTGTTAATGCCGGCGTTCGAATACGAAGAAACAAAGGTCACAGCCGAT 1239
BSNT_00741___ 1240 ATCGGCGGAGAAACCTTTAGGGCGAAAGGCAAAACCGTGCAATCGCAAGG 1289
||||||||.|||||.||||..||.|||||.|||||.||.|||||||..||
RBAM_004480__ 1240 ATCGGCGGCGAAACATTTACCGCAAAAGGGAAAACGGTTCAATCGCCTGG 1289
BSNT_00741___ 1290 GTGGAAAGCCGTTTATGATATG---GCGGATGAGGATGATGAGCAGGAGG 1336
.|||||||||||.||||||||| |.||||||.||.||| ||.||||
RBAM_004480__ 1290 CTGGAAAGCCGTGTATGATATGTACGAGGATGACGACGAT---CATGAGG 1336
BSNT_00741___ 1337 ATGACAGAGACCAGACACTTCCTGCGCTTCAAAAAG----GCGACACACT 1382
|.||||.|||||||||.||.||.|..|||||..|.| |||.|.||||
RBAM_004480__ 1337 AAGACAAAGACCAGACGCTCCCGGATCTTCAGCAGGGTCAGCGCCTCACT 1386
BSNT_00741___ 1383 TGCCGTCCGCA-CGTTAACGGAAACAAGCGGCCAAACGAAGCCGCCTGCC 1431
|| |.|| |.||.|..|||||.|||||.||.|||||.|||||.||.
RBAM_004480__ 1387 ----GT-CTCATCATTGAAAGAAACGAGCGGACAGACGAAACCGCCGGCG 1431
BSNT_00741___ 1432 CGCTTTAATGAAGGGACCTTGCTATCAGCGATGGAAAACCCAAGCGCGTT 1481
||||||||||||||.||..||.||||.||||||||.|||||||||||.||
RBAM_004480__ 1432 CGCTTTAATGAAGGCACGCTGTTATCCGCGATGGAGAACCCAAGCGCCTT 1481
BSNT_00741___ 1482 TATGCAGGGAGAAGAAAAAGGCCTCGTCAAAACGCTTGGAGAAACAGGCG 1531
|||||||||||||||.||...|||.||.|||||..|.||.|||||.||||
RBAM_004480__ 1482 TATGCAGGGAGAAGAGAAGAACCTTGTGAAAACATTGGGTGAAACCGGCG 1531
BSNT_00741___ 1532 GCCTCGGCACGGTGGCAACGCGTGCCGACATTATTGAAAAACTGTTCAAC 1581
|.|||||.||.||.||.||.||.||.||.||.||||||||||||||||||
RBAM_004480__ 1532 GACTCGGAACAGTCGCCACCCGCGCTGATATCATTGAAAAACTGTTCAAC 1581
BSNT_00741___ 1582 AGCTTTTTAATCGAGAAAAAAGGCCAAGATATTTTTATCACATCTAAAGG 1631
||.||.||.|||||||||||||...||||||||||.||.||.||.|||||
RBAM_004480__ 1582 AGTTTCTTGATCGAGAAAAAAGAAAAAGATATTTTCATTACGTCAAAAGG 1631
BSNT_00741___ 1632 AAAACAGCTCCTGCAGCTTGTTCCGGAGGATCTGAAATCACCGGCCTTAA 1681
.||.||||||.|.|||||.||.|||||.|||.|.||||||||||||||||
RBAM_004480__ 1632 GAAGCAGCTCTTACAGCTCGTCCCGGAAGATTTAAAATCACCGGCCTTAA 1681
BSNT_00741___ 1682 CAGCAGAATGGGAGCAAAAGCTGTCTGCAATCGCTGCCGGCAAATTGAAA 1731
|.||.||.||||||||||||||.||.||.|||||.||.||||||.|||||
RBAM_004480__ 1682 CCGCTGAGTGGGAGCAAAAGCTCTCCGCCATCGCAGCGGGCAAACTGAAA 1731
BSNT_00741___ 1732 TCGGCTGTTTTTATTAAAGATATGAAGGCTTACGCTCACCAAACGGTAAA 1781
||.||.||.||.||||||||.|||||..|.||.||...|.|||||||.||
RBAM_004480__ 1732 TCCGCCGTGTTCATTAAAGACATGAAAACATATGCGGGCAAAACGGTGAA 1781
BSNT_00741___ 1782 AGAAATCAAAAACAGCAGCCAAACCTTCCGACATGACAACATTACGGGAA 1831
.||||||||||||||||||||.||.|||.||||||||||||||.|.||.|
RBAM_004480__ 1782 GGAAATCAAAAACAGCAGCCAGACTTTCAGACATGACAACATTTCAGGCA 1831
BSNT_00741___ 1832 CGGCATGTCCGGAATGCGGCAAAATGATGCTGAAAGTAAACGGCAAACGC 1881
|.||.||.||.||.|||||||||||||||||.|||||.||||||||||||
RBAM_004480__ 1832 CCGCCTGCCCTGATTGCGGCAAAATGATGCTTAAAGTCAACGGCAAACGC 1881
BSNT_00741___ 1882 GGTACGATGCTCGTGTGCCAAGATCGTGAATGCGGAAGCAGAAAAACGAT 1931
||.|||||||||||.||.||.||||||||.|||||.|||.|.||||||.|
RBAM_004480__ 1882 GGCACGATGCTCGTATGTCAGGATCGTGAGTGCGGCAGCCGGAAAACGCT 1931
BSNT_00741___ 1932 TGCCCGAAAAACAAACGCACGCTGCCCGAACTGCCATAAACGAATGGAGC 1981
.||..|||||||||||||.|||||.||||||||.|||||...||||||||
RBAM_004480__ 1932 GGCAAGAAAAACAAACGCCCGCTGTCCGAACTGTCATAAGAAAATGGAGC 1981
BSNT_00741___ 1982 TTCGCGGCCAAGGCGAGGGCCAAACCTTTGCGTGTGTGTGCGGTCACCGT 2031
||||||||||.|||||.|||||||||||.||.|||||.|||||.|||||.
RBAM_004480__ 1982 TTCGCGGCCAGGGCGAAGGCCAAACCTTCGCATGTGTATGCGGCCACCGG 2031
BSNT_00741___ 2032 GAAAAGCTCTCTGTATTTGAAAAACGAAAAAACAAAGACAAA-------G 2074
||.||.||.||.||.||||||||.||.||....|||||.||| |
RBAM_004480__ 2032 GAGAAACTGTCCGTCTTTGAAAAGCGCAAGGCGAAAGATAAATCCGGACG 2081
BSNT_00741___ 2075 CGCGTGCTACCAAACGGGACGTATC--CTCTTATATGAAAAAACAAAATA 2122
|||.| ||||.|||||| ||| ||||||||||||||..|||||.|
RBAM_004480__ 2082 CGCAT----CCAAGCGGGAC--ATCAACTCTTATATGAAAAGCCAAAACA 2125
BSNT_00741___ 2123 AAGATGAGCCGATTAACAACGCGCTGGCAGAACAGCTGAAAAAACTCGGT 2172
||||.||||||||.|||||||||||||||||||||||||||||||||||.
RBAM_004480__ 2126 AAGAGGAGCCGATGAACAACGCGCTGGCAGAACAGCTGAAAAAACTCGGC 2175
BSNT_00741___ 2173 TTGGATAAATAA 2184
.||||||||||.
RBAM_004480__ 2176 CTGGATAAATAG 2187
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