Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00698 and RBAM_004230
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00698.1.9828.seq
# -bsequence dna-align/RBAM_004230___mtlA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00698-RBAM_004230___mtlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00698-RBAM_004230___mtlA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00698
# 2: RBAM_004230___mtlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1469
# Identity: 1153/1469 (78.5%)
# Similarity: 1153/1469 (78.5%)
# Gaps: 67/1469 ( 4.6%)
# Score: 4583.5
#
#
#=======================================
BSNT_00698 1 ATGCAGCAGCAAGAACAGCAGCAAGGCGGCATGAAAGTGAAAGTGCAGCG 50
|| |||||||||| |||||||..||||||||||||||..|.|||||
RBAM_004230__ 1 AT---GCAGCAAGAA---CAGCAAGCTGGCATGAAAGTGAAGATACAGCG 44
BSNT_00698 51 CTTTGGGAGTTATTTGAGCGGAATGATCATGCCGAATATCGGCGCGTTTA 100
.||.||.||||||||.|||||.|||||||||||||||||||||||.||||
RBAM_004230__ 45 GTTCGGCAGTTATTTAAGCGGTATGATCATGCCGAATATCGGCGCATTTA 94
BSNT_00698 101 TCGCGTGGGGTATCATTACCGCGCTGTTTATTCCGGCAGGATGGTTTCCG 150
||||.|||||.||.||.|||||||||||||||||.||.||||||||||||
RBAM_004230__ 95 TCGCATGGGGAATTATCACCGCGCTGTTTATTCCTGCGGGATGGTTTCCG 144
BSNT_00698 151 AATGAACAGCTGAACACGCTGGTCAGCCCGATGATTACGTATTTATTGCC 200
|||...||||||||.||..||||.||||||||||||||||||.||.||||
RBAM_004230__ 145 AATCCGCAGCTGAATACATTGGTAAGCCCGATGATTACGTATCTACTGCC 194
BSNT_00698 201 GCTTTTGATAGCGTATACAGGCGGAAAAATGATCTACGACCACCGCGGCG 250
||||||.||.||.|||||.||||||||||||||.|||||.||||||||.|
RBAM_004230__ 195 GCTTTTAATCGCATATACGGGCGGAAAAATGATTTACGATCACCGCGGGG 244
BSNT_00698 251 GAGTTGTCGGAGCGACAGCGGCAATTGGGGTGATTGTCGGATCGGATATT 300
||||.|||||||||||.|||||.||.||.||.|||||||||.||||.|||
RBAM_004230__ 245 GAGTCGTCGGAGCGACGGCGGCCATCGGAGTCATTGTCGGAGCGGACATT 294
BSNT_00698 301 CCAATGTTTTTAGGCGCAATGATTATGGGTCCGCTTGGCGGATACCTCAT 350
||.|||||.|||||.||||||||||||||.||..|.|||||.||.|||||
RBAM_004230__ 295 CCGATGTTCTTAGGGGCAATGATTATGGGGCCTTTGGGCGGTTATCTCAT 344
BSNT_00698 351 TAAACAGACTGATAAATTA---------TTCAAGGATAAAGTCAAGCAAG 391
||||| ||||| ||.||.||||||||||..||.|
RBAM_004230__ 345 TAAAC---------AATTAGACCGTGTGTTTAAAGATAAAGTCAGACAGG 385
BSNT_00698 392 GCTTTGAAATGCTGATCAACAACTTTACGGCAGGGATTGTCGGCGCGGCT 441
|.|||||||||||||||||||||||.|||||.||.|||.||||.||.|..
RBAM_004230__ 386 GTTTTGAAATGCTGATCAACAACTTCACGGCGGGAATTATCGGAGCTGTG 435
BSNT_00698 442 TTAACGATTCTCGCGTTTTACGCTATCGGCCCGGTTGTCCTGACGCTAAA 491
.|.||||||.||||||||||.||.|||||||||||.||||||.|.||.||
RBAM_004230__ 436 CTGACGATTATCGCGTTTTATGCGATCGGCCCGGTCGTCCTGTCTCTTAA 485
BSNT_00698 492 TAAATTGCTGGCGGCTGGTGTGGAAGTCATTGTACACGCTAATTTACTGC 541
.||||||||||||||.|||||||||||||||||.|||||.|||||.||||
RBAM_004230__ 486 CAAATTGCTGGCGGCGGGTGTGGAAGTCATTGTCCACGCGAATTTGCTGC 535
BSNT_00698 542 CGGTAGCCAGTGTTTTTGTAGAGCCGGCGAAAGTGTTGTTCCTTAACAAC 591
||.|.||.||.|||||.|||||||||||||||||..|||||||.||.|||
RBAM_004230__ 536 CGATTGCAAGCGTTTTCGTAGAGCCGGCGAAAGTCCTGTTCCTGAATAAC 585
BSNT_00698 592 GCCATAAACCACGGAATCTTAAGCCCGATCGGAATCGAGCAAGCATCCCA 641
||.||.||||||||.||.|||||.|||||||||||||||||.||..||.|
RBAM_004230__ 586 GCGATCAACCACGGCATTTTAAGTCCGATCGGAATCGAGCAGGCCGCCAA 635
BSNT_00698 642 AACAGGAAAATCAATTCTGTTTTTAGTAGAAGCAAACCCTGGACCGGGGC 691
|.|.||.|||||.||||||||||||||.|||||.|||||.||.|||||.|
RBAM_004230__ 636 AGCGGGTAAATCCATTCTGTTTTTAGTGGAAGCGAACCCCGGGCCGGGAC 685
BSNT_00698 692 TCGGCATTTTGCTGGCGTACATGTTCTTTGGCAAAGGATCTTCAAAATCA 741
||||.|||||.|||||.||.|||||||||||.|||||.|||||||.|||.
RBAM_004230__ 686 TCGGTATTTTACTGGCATATATGTTCTTTGGGAAAGGCTCTTCAAGATCG 735
BSNT_00698 742 ACGGCTCCCGGTGCGGCGATCATCCATTTCTTCGGCGGGATTCACGAGAT 791
||||||||.||.|||||||||||.|||||||||||.||||||||.||.||
RBAM_004230__ 736 ACGGCTCCGGGAGCGGCGATCATTCATTTCTTCGGGGGGATTCATGAAAT 785
BSNT_00698 792 TTACTTCCCGTACATTCTGATGAAACCGGCCCTGATTCTTGCAGCCATTG 841
.||.|||||.||||||.|.|||||||||...||||||||.||.||.||.|
RBAM_004230__ 786 CTATTTCCCTTACATTTTAATGAAACCGATGCTGATTCTCGCGGCGATCG 835
BSNT_00698 842 CCGGCGGAGCAAGCGGACT-CTTAACGTTTACGATCTTTAATGCCGGACT 890
|.||.|||||.|||||||| ||| ||.||..||||||||||.||.||.||
RBAM_004230__ 836 CTGGGGGAGCGAGCGGACTGCTT-ACATTCTCGATCTTTAACGCGGGTCT 884
BSNT_00698 891 TGTCGCGGCAGCGTCACCGGGAAGCATTATCG-CATTGATGGCAATGACG 939
||||||||||.|.||.|||||||||||.|||| |||| .|.||..|||||
RBAM_004230__ 885 TGTCGCGGCATCATCTCCGGGAAGCATCATCGCCATT-TTAGCGCTGACG 933
BSNT_00698 940 CCAAGAGGAGGCTATTTCGGCGTATTGGCGGGTGTATTGGTCGCTGCAGC 989
||.|.||||.||||..|||||||..|||||||.||..|.||.||.||.||
RBAM_004230__ 934 CCGAAAGGAAGCTACCTCGGCGTGCTGGCGGGCGTCATCGTTGCCGCGGC 983
BSNT_00698 990 TGTATCGTTCATCGTTTCAGCAGTGATCCTGAAATCCTCTAAAGCTAGTG 1039
.||||||||.|||||.||.||..|.||.||||||||.||||||||..|.|
RBAM_004230__ 984 CGTATCGTTTATCGTCTCGGCGCTTATTCTGAAATCGTCTAAAGCGGGCG 1033
BSNT_00698 1040 AAGAAGACCTGGCTGCCGCAACAGAAAAAATGCAGTCCATGAAGGGGAAG 1089
|||||||..||.|.|||||..|.||||||||||||...|||||.||.|.|
RBAM_004230__ 1034 AAGAAGATTTGACAGCCGCGGCGGAAAAAATGCAGGAAATGAAAGGCAGG 1083
BSNT_00698 1090 AAAAGCCAAGCAGCAGCTGCTTTAGAGGCGGAACAAGCCAAAGCAGAAGA 1139
|||||..||||.||.||.||.|| ||| ||.|||||..|||||
RBAM_004230__ 1084 AAAAGTGAAGCGGCGGCCGCGTT---GGC------AGACAAAGAGGAAGA 1124
BSNT_00698 1140 ----------AGCGTCTGAGCTG---TCTCCTGAAAGCGTGAACAA---- 1172
||||.| |||| |.||| || |||.|||
RBAM_004230__ 1125 GCCGGAAAACAGCGCC---GCTGATATTTCC-----GC-TGACCAAGTCA 1165
BSNT_00698 1173 ----AATTATCTTTGCGTGTGATGCGGGAATGGGATCAAGTGCCATGGGG 1218
.||||||||.||||||||.|||||.||||||||.||.||.|||||.
RBAM_004230__ 1166 GCCGCATTATCTTCGCGTGTGACGCGGGTATGGGATCGAGCGCAATGGGT 1215
BSNT_00698 1219 GCATCCATCTTAAGAAACAAAGTGAAAAAAGCGGAGCTTGACATCAGTGT 1268
||.|||||.|||||||||||||||||||||||.||.||.||.||...|||
RBAM_004230__ 1216 GCCTCCATTTTAAGAAACAAAGTGAAAAAAGCAGACCTGGATATTGATGT 1265
BSNT_00698 1269 GACCAACACGGCCATTAACAATCTGCCAAGCGATGCGGATATTGTCATCA 1318
|||.||.|||.|.||.||.||||||||.|..||.||||||||.|||||.|
RBAM_004230__ 1266 GACAAATACGTCGATCAATAATCTGCCGAATGACGCGGATATCGTCATTA 1315
BSNT_00698 1319 CCCACAAAGATTTAACAGACCGCGCGAAAGCAAAGCTGCCGAACGCGACG 1368
|.||.||.||..|.||.||||||||||||||.|||||||||.|.|||..|
RBAM_004230__ 1316 CGCATAAGGACCTGACTGACCGCGCGAAAGCGAAGCTGCCGCAGGCGGTG 1365
BSNT_00698 1369 CACATATCAGTGGATAACTTCTTAAACAGCCCGAAATACGACGAGCTGAT 1418
|||||.||.||.|||||.|||||.|||||||||||||||||.||.|||||
RBAM_004230__ 1366 CACATTTCGGTTGATAATTTCTTGAACAGCCCGAAATACGATGAACTGAT 1415
BSNT_00698 1419 TGAAAAGCTGAAAAAGTAA 1437
|||||||||.|||||.|||
RBAM_004230__ 1416 TGAAAAGCTTAAAAACTAA 1434
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.