Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00656 and RBAM_003850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00656___yclG.1.9828.seq
# -bsequence dna-align/RBAM_003850___yclG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00656___yclG-RBAM_003850___yclG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00656___yclG-RBAM_003850___yclG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00656___yclG
# 2: RBAM_003850___yclG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1850
# Identity: 1214/1850 (65.6%)
# Similarity: 1214/1850 (65.6%)
# Gaps: 199/1850 (10.8%)
# Score: 3738.5
#
#
#=======================================
BSNT_00656___ 1 ATGGCTGAATTC---------ATATTAAATGCAGCGGATTTCGGTGTTCC 41
|.||.||| || |||||| ||||||.||||||..|
RBAM_003850__ 1 -TTGCCGAA-TCGTATATTGGATATTA-------CGGATTGCGGTGTGGC 41
BSNT_00656___ 42 TGGAGATGGTAAAACGGATTCGACAGAACGG-----ATTAATCAGTGCCT 86
.|.|||.||.|||||.|||..| |||| ||.||.||.|||.|
RBAM_003850__ 42 GGCAGACGGAAAAACCGATGTG-----ACGGGCGCCATCAACCAATGCTT 86
BSNT_00656___ 87 --------CAGTACAGCTGTTTCGAAAGGCTATCATACTGTCTGGTTTCC 128
|.|| |||| .|||||.|||||||.||.|..|||||
RBAM_003850__ 87 GGCCAAGGCCGT-CAGC-------GAAGGCAATCATACGGTGTTTTTTCC 128
BSNT_00656___ 129 AAAGGGAACATATTTAATAGACGCAACGCTTGGCGGAGATCTTAATCAG- 177
....|||||.|||..|||..|||..|||||||||||.|| .|.|||
RBAM_003850__ 129 GCCCGGAACGTATAAAATCAACGGCACGCTTGGCGGGGA----CAGCAGC 174
BSNT_00656___ 178 -AG--GTTTCGAAACGCGGGGATCATTGTTCCCGGCAACC---------- 214
|| ||||||.|||||.|||||.|..||.||..||.|.|
RBAM_003850__ 175 CAGCCGTTTCGGAACGCCGGGATTAACGTGCCGAGCCATCTCACCATCGT 224
BSNT_00656___ 215 TTGAGATTATGATGGACCCCGAATGTATCATGAAAGTGATACCGAATAGT 264
||.|||| ||.|||||.|..||.||||||...|||||.||.
RBAM_003850__ 225 TTTAGAT----------CCGGAATGCACGATTAAAGTGGCGCCGAACAGC 264
BSNT_00656___ 265 TCGTGGGGTTATTCCGCATTTTATGTAGGCAAGCAAGAGAATATAACTAT 314
||.|||||.||.||.||.||.|||.||||||.||..||.|||.|.||.||
RBAM_003850__ 265 TCCTGGGGCTACTCGGCTTTCTATATAGGCAGGCGGGAAAATGTCACCAT 314
BSNT_00656___ 315 TTCCGGAGGACAAATTATCGGCGAACGGGATGAGCATACGT------ATG 358
..||||.||.|..||.|||||||||||||||||.||.|||| |||
RBAM_003850__ 315 CACCGGCGGCCGGATCATCGGCGAACGGGATGAACACACGTATACCAATG 364
BSNT_00656___ 359 T--CTCGGCGGGGATAAGGTCAACCCATGAATGGGGCTTTGGCATATGTA 406
| ||..|| |.||.||||||||||||||.|||||.||.||||
RBAM_003850__ 365 TCCCTTTGC--------GTTCGACCCATGAATGGGGGTTTGGAATCTGTA 406
BSNT_00656___ 407 TTGAAGGATGCTCGAATGTTCTCATTGATGATGTGAAAATTTCCGATTTT 456
|||||||..||...|||||.||.||.||..|||||||.|||||.||||||
RBAM_003850__ 407 TTGAAGGCAGCAGCAATGTGCTGATCGAAAATGTGAAGATTTCGGATTTT 456
BSNT_00656___ 457 ACCGGCGATGGGATCATAGTCAGCCCAAGGGGATTAAAGACCAATCA-AG 505
||.||.||.||.||.||.||||||||....||.||||| |.|||.|| .|
RBAM_003850__ 457 ACGGGAGACGGCATTATTGTCAGCCCGCTCGGGTTAAA-AACAAACAGTG 505
BSNT_00656___ 506 ATTATCG-AACGTCAGAGCAAATTATCATCCGCCGCTGTGAGGTTCGGCG 554
|||| || |||.|||||.||..|.|.|.||||||||||||||.|..|||.
RBAM_003850__ 506 ATTA-CGAAACTTCAGAACAGGTGACCCTCCGCCGCTGTGAGATCAGGCA 554
BSNT_00656___ 555 GTCGAGGAGAAATAACATTTCCATTACCGGATGTGACATGGTCACGGTGG 604
|||.|||.||||.||||||||.||.|||||.||..|.|..||.|||||||
RBAM_003850__ 555 GTCAAGGCGAAACAACATTTCAATCACCGGCTGCAATACCGTTACGGTGG 604
BSNT_00656___ 605 AGGAGTGCTTGATTGAAGATGCCGG--AACGGGGAATGGAACAGCCCCGA 652
|.||.|||.||||||||||.||||| || |||||.|||||.||.||||
RBAM_003850__ 605 AAGAATGCGTGATTGAAGACGCCGGGCAA--GGGAACGGAACGGCTCCGA 652
BSNT_00656___ 653 AATTCGGAATTGACATTGAAGGATATGGCGAAGGTGACGTTGATTATGAG 702
||||||||||.||.||||||...||.||.|||||.||..||||||||||.
RBAM_003850__ 653 AATTCGGAATCGATATTGAATCGTACGGAGAAGGCGATATTGATTATGAA 702
BSNT_00656___ 703 GAACCGATTAATGTATCAATTCGCAATAACCACTTTGTTGGAAACGTTTC 752
|||.|..||.||.|..|..|.|||||.|||..||||...|||||||...|
RBAM_003850__ 703 GAAGCTCTTCATATTACGGTACGCAACAACTTCTTTTCCGGAAACGCCGC 752
BSNT_00656___ 753 AAGTTCTGTGACCAATTTTAACGGGTATGGCATTTTAATAGAAGGAAATC 802
|||.||.||.||||||||||||||.|||....|.|||||.||||||||||
RBAM_003850__ 753 AAGCTCAGTCACCAATTTTAACGGATATAATGTGTTAATTGAAGGAAATC 802
BSNT_00656___ 803 ACTCTGACAATACAATCAGCTACGGATATGGGACGCAAACAGTGATCAAG 852
|.||.||.||.||||||||||||||.||||||.|.||.||.||.||...|
RBAM_003850__ 803 ATTCCGATAACACAATCAGCTACGGGTATGGGGCACATACCGTCATTTCG 852
BSNT_00656___ 853 GGAAATATACTGAGGCGCCCTGAAGACGCGGCGGCTGCGCCAAG------ 896
||.|||.|..|....||..|.|| |||||||| ||||
RBAM_003850__ 853 GGGAATGTCTTCTTTCGGTCAGA-----CGGCGGCT----CAAGGACCGC 893
BSNT_00656___ 897 AGTCGGGATAACCGGACTCGGTGTATCACAAGGAAAAGAGACCAGTGATG 946
||||| ||||||..|||||.|||||||||.|.||.|.|||..|||
RBAM_003850__ 894 AGTCG------CCGGACAAGGTGTGTCACAAGGACAGGACAGCAGCAATG 937
BSNT_00656___ 947 CAGTGATCGCTGGCAACCTCATTACCGGATTTTCAACTGGAATTGATGTC 996
|.||.||..|...|||..|.||||||||.|||||.||.|||||.|||||.
RBAM_003850__ 938 CCGTCATTTCCAACAATATGATTACCGGTTTTTCCACCGGAATAGATGTA 987
BSNT_00656___ 997 AGGGGAAAGAGCGTTCTTGTGACGAACAACAAAATCAG-CAACTTTGAAA 1045
||||||||.|||||.||.||.||..|.||||||||||| ||| |||||||
RBAM_003850__ 988 AGGGGAAAAAGCGTCCTCGTCACCCATAACAAAATCAGTCAA-TTTGAAA 1036
BSNT_00656___ 1046 ACACAGGGATATTGGTTTATCAGTCTTCCGACGTAAAGGTAGACGGAAAC 1095
|.||.||.||.|..||.||||||.|....||.||.|..||.|||||
RBAM_003850__ 1037 ATACGGGCATTTCCGTCTATCAGGCAGAAGATGTGACCGTTGACGG---- 1082
BSNT_00656___ 1096 CAA----ATTCAAAACGGACTGTCTGAAACAAGGCGCAGCATCGGTCTTC 1141
||| |||.|||||||||..||.|||||.||.||.||||..||..|.|
RBAM_003850__ 1083 CAATGTCATTGAAAACGGACGTTCCGAAACGAGACGAAGCACTGGGATGC 1132
BSNT_00656___ 1142 GCGCAGTGCTGTCAGATGACATCGCTTTTCTGAATAACTGTCTCATTCAA 1191
|.||...||||||.||..||..||..|||.|||||||...|||.|.|||.
RBAM_003850__ 1133 GGGCGACGCTGTCGGAAAACGCCGTCTTTATGAATAATACTCTGAATCAG 1182
BSNT_00656___ 1192 GT--CGTTGACGGTGTGAACGTTTCCGGCGGAAATATGATCATTAAAGAT 1239
|| || |||||..|.|.|.|.||.|.|||.|||||.|.|.|.|||.|.
RBAM_003850__ 1183 GTAACG--GACGGAATCAGCATGTCGGCCGGCAATATCACCGTAAAACAA 1230
BSNT_00656___ 1240 AATCTCCTGAGAAAATTCAGCCGGGGCATTTGGATTGCTCA--AGGGAAC 1287
|||.|.||||.|...||||||||||||||.|||.| |.|| .||.||.
RBAM_003850__ 1231 AATGTGCTGACATCGTTCAGCCGGGGCATATGGGT--CACAGGCGGAAAT 1278
BSNT_00656___ 1288 GCGGTGATTGAAGGGAATATACTGAATCCTGACGCGTTTGAAGCAGTGC- 1336
||.||.||||||||.||||..||||.|||..|.|||| |.|||.||
RBAM_003850__ 1279 GCCGTTATTGAAGGAAATACGCTGATTCCGAATGCGT----ATCAGGGCG 1324
BSNT_00656___ 1337 ---CGGAATCATATTCTGTTTCCGTCACAAACAATGCCGGCGCCATCATC 1383
||||.||.|||.|.||.||.||.|||||..|.|||.|.||..|||||
RBAM_003850__ 1325 CCGCGGAGTCCTATGCCGTATCTGTGACAAATGACGCCAGGGCTGTCATC 1374
BSNT_00656___ 1384 AAAAACAATACATTTAAAGAG-TTCAAAAATTACCCCATTTATTGCTCCA 1432
||....||| |..||.||.|| |.||||||.||.|||||||...|.||.|
RBAM_003850__ 1375 AAGGGAAAT-CTCTTCAAAAGCTACAAAAACTATCCCATTTTCAGTTCAA 1423
BSNT_00656___ 1433 CAAGTGCGAAAACCTCAATTATCGGCAACCACTTAGAGAGATCTCCGCTT 1482
||....||..||||||..|.|||.||||||.|||.||...|||.||||||
RBAM_003850__ 1424 CATCCTCGGGAACCTCTGTCATCAGCAACCGCTTTGAATCATCACCGCTT 1473
BSNT_00656___ 1483 TTGGTCACC----ATCT--ATATCA-GCGCCGGTGTGCATGAGATTTTTG 1525
.|.||.||| |||| || ||| ||.| ||||||..|..|.|
RBAM_003850__ 1474 ATCGTTACCGTGTATCTGAAT-TCAGGCAC------GCATGAAGTCATAG 1516
BSNT_00656___ 1526 ATAATACCATTTCAGTCAACAGAACAGCCGGGAATCCGATTGTGATTTAT 1575
|.|||||..|..|..|||||.||||.||.||.|..|||||.|..||.|||
RBAM_003850__ 1517 ACAATACGCTCACGATCAACCGAACGGCGGGCAGCCCGATCGGCATCTAT 1566
BSNT_00656___ 1576 ATCAATGGCTCTGCAGGCTCTA------TCGTCTCAGGAAACACCATCAA 1619
.|.||.|| |..|||.| ||||.||.||.||.||||||||
RBAM_003850__ 1567 CTGAACGG------AACCTCCAATTCCCTCGTGTCGGGCAATACCATCAA 1610
BSNT_00656___ 1620 TAACCTCTCCGCGGACACTGCGACAGCTATTCAAACAACCACATCAACCA 1669
.|||||.|||||.|...||||..|.||.||.|| |||||
RBAM_003850__ 1611 CAACCTTTCCGCCGCTTCTGCTTCCGCCATCCA------------AACCA 1648
BSNT_00656___ 1670 ATTCC------------AAAATCATCGGCAACCGCATTTTTAAAGGGACC 1707
||||| |||||||||||||||||||||.|.|.|||...|
RBAM_003850__ 1649 ATTCCTCCGCAAGTACTAAAATCATCGGCAACCGCATTATCAGAGGCGTC 1698
BSNT_00656___ 1708 ATCAACAAACATAGC-AGTGATAC-AATAGACGGCAATATGATTGTCTGA 1755
||....||||| .|| |..||||| .|.|| |||.|||||..|..|||||
RBAM_003850__ 1699 ATTGTGAAACA-CGCGACAGATACGGACAG-CGGAAATATCGTCATCTGA 1746
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