Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00567 and RBAM_003430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00567___ycgL.1.9828.seq
# -bsequence dna-align/RBAM_003430___ycgL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00567___ycgL-RBAM_003430___ycgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00567___ycgL-RBAM_003430___ycgL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00567___ycgL
# 2: RBAM_003430___ycgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 910
# Identity: 555/910 (61.0%)
# Similarity: 555/910 (61.0%)
# Gaps: 173/910 (19.0%)
# Score: 1752.5
#
#
#=======================================
BSNT_00567___ 1 GTGAAAAGCCGCCGCATATCATCAGGCGGTTTTTTTCTGCAAACTGCCGG 50
RBAM_003430__ 0 -------------------------------------------------- 0
BSNT_00567___ 51 AATGAGAACAGACTGGAGACGAATAGATATGAAACAAAGAATCATTGATG 100
|||||||||||.|||||.||.|
RBAM_003430__ 1 ----------------------------ATGAAACAAAGGATCATCGAAG 22
BSNT_00567___ 101 AATTAAAACGGATCG-AGCAGTCA-TATGGAGTCAAAATCGTGTATGCCG 148
||||||||||.||.| |||| || .|.||.|||||..|..|.||.||||
RBAM_003430__ 23 AATTAAAACGAATTGAAGCA--CAGCACGGCGTCAAGGTGCTTTACGCCG 70
BSNT_00567___ 149 TCGAGTCAGGAAGCCGCGCATGGGGATTTCCGTC--GCAGGATAGTGATT 196
|.||.|||||.||||||||||||||.|||||||| || ||.||.||.|
RBAM_003430__ 71 TAGAATCAGGGAGCCGCGCATGGGGGTTTCCGTCAAGC--GACAGCGACT 118
BSNT_00567___ 197 ACGACGTCCGCTTTATTTATGTGCCGAAAAAGGAGTGGTATTTTTCAATT 246
||||.||.||.|||.||||||||||||||||.||.|||||.|||||.||.
RBAM_003430__ 119 ACGATGTGCGGTTTCTTTATGTGCCGAAAAAAGAATGGTACTTTTCGATC 168
BSNT_00567___ 247 GAGCAGGAGCGTGATGTCATTGAGGAACCGATTCACGATTTGCTGGATAT 296
||.|.|.|..|.||||||||.||.||.||||||||.||..||||.||.||
RBAM_003430__ 169 GAACCGCATAGGGATGTCATAGAAGAGCCGATTCATGACATGCTTGACAT 218
BSNT_00567___ 297 CAGCGGCTGGGAGCTGAGAAAAACGCTTAGGCTTTTCAAAAAGTCAAACC 346
||||||||||||.|||||||||.|||||||||||||.|||||.|||||.|
RBAM_003430__ 219 CAGCGGCTGGGAACTGAGAAAAGCGCTTAGGCTTTTTAAAAAATCAAATC 268
BSNT_00567___ 347 CTCCGCTCCTCGAATGGCTGTCCTCAGACATTGTGTATTACGAAGCATTT 396
|.||.||..|.||||||||.||.||.||.||..|.|||||.|||||.||.
RBAM_003430__ 269 CGCCTCTTTTGGAATGGCTCTCTTCTGAGATGATCTATTATGAAGCTTTC 318
BSNT_00567___ 397 ACGACCGCAGAGCAGTTAAGAAAAC------TGCGCACGGAGGCATTTAA 440
.|..|.||.||..||.|..|||||| |.||| ||.|||..
RBAM_003430__ 319 TCAGCGGCTGAAAAGCTTCGAAAACTAAAAATCCGC------GCCTTTTC 362
BSNT_00567___ 441 GCCTGAAGCAAGCGTGTATCACTATATCAATATGGCGAGAAGGAACGTCA 490
|||||||||..||.|.|||||.|||.||||||||||.|.|.||||.|..|
RBAM_003430__ 363 GCCTGAAGCCGGCATCTATCATTATCTCAATATGGCAAAACGGAATGAAA 412
BSNT_00567___ 491 AAGATTATCTAC--AA-----GGACA-AGAGGTCAAAATTAAAAAGTACT 532
|| || || ||.|| .||.||.||.|||||||||||.|
RBAM_003430__ 413 AA--------ACGGAATTGCGGGGCAGTGAAGTAAAGATTAAAAAGTATT 454
BSNT_00567___ 533 TCTACGTTCTTCGGCCTATTTTGGCCTGCCAATGGATTGAAAAGCACGGA 582
|.||.|||||.||.|||.|..|.||||||..|||||||||||.|..|||.
RBAM_003430__ 455 TTTATGTTCTGCGTCCTCTCCTTGCCTGCAGATGGATTGAAACGTTCGGC 504
BSNT_00567___ 583 ACCATACCGCCAATGGACTT-----TACTG----------TTTTGATGAA 617
.||.|||||||.|||...|| ||||| |.||||.|.|
RBAM_003430__ 505 TCCGTACCGCCGATGTCATTTCCCGTACTGGCCGATGCCTTATTGACGGA 554
BSNT_00567___ 618 TGAACTTGTTCGTGAACCCGAGCTGAAGGCTGAAATGGAAACCTTGCTTG 667
|||| |.|||.|...|||||||..|.||..|||||.
RBAM_003430__ 555 TGAA---------------GCGCTCATTTCTGAAATCAATACACTGCTTA 589
BSNT_00567___ 668 AACGGAAAAGAAGAGGGGAAGAGCTTGACCTC--GAAGCAAGAA--TCGA 713
.|.||||||.|||.||..|.|||||.| ||| |||.|.|||| .|||
RBAM_003430__ 590 CAAGGAAAAAAAGCGGTCAGGAGCTGG--CTCCGGAACCCAGAAATACGA 637
BSNT_00567___ 714 TGTAATTCACCAATTCATTGAAACGGAAATCGAAAGAATCATGGAAGC-- 761
|.|||||...|||.||.|||...|||||.|||.|.||| || ||
RBAM_003430__ 638 --TCATTCATGCATTTATAGAAGAAGAAATAGAACGCATC--GG--GCAC 681
BSNT_00567___ 762 ---GGCAAAA-GAACTGAAGGCAGAGAAAAAAGATATGACATCTGAATTG 807
|.||||| ||.|..||.|| .||||...||.||.||....|||.||
RBAM_003430__ 682 TATGTCAAAACGATCAAAACGC--CGAAACCTGACATAACGGAGGAACTG 729
BSNT_00567___ 808 AACCGTTTGCTTTTGA---ATACGGTTGAAGAAGTGTGGAAGG---ATGG 851
||.|| |||.|||| |.||.||.|||||.|.||||..|| |.||
RBAM_003430__ 730 AATCG---GCTATTGATTCAGACCGTCGAAGAGGCGTGGGGGGAAAAAGG 776
BSNT_00567___ 852 AGGAAGCTGA 861
.||||..|||
RBAM_003430__ 777 CGGAAATTGA 786
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