Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00532 and RBAM_003260
See
Amino acid alignment /
Visit
BSNT_00532 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00532.1.9828.seq
# -bsequence dna-align/RBAM_003260___ycgA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00532-RBAM_003260___ycgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00532-RBAM_003260___ycgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00532
# 2: RBAM_003260___ycgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 997/1453 (68.6%)
# Similarity: 997/1453 (68.6%)
# Gaps: 176/1453 (12.1%)
# Score: 3714.5
#
#
#=======================================
BSNT_00532 1 ATGAGTATGCCAGCAGCCGAAACACAGCCTAAGAAAAAACGAATGACATT 50
RBAM_003260__ 0 -------------------------------------------------- 0
BSNT_00532 51 TAAAATGCCTGACGCCTATGTCCTCTTATTTATGATTGCTTTCATTTGCG 100
RBAM_003260__ 0 -------------------------------------------------- 0
BSNT_00532 101 CAATCGCTTCATATATTGTGCCGGCAGGTGAATTTGACCGCGTGACAAAG 150
|||||||||
RBAM_003260__ 1 -----------------------------------------GTGACAAAG 9
BSNT_00532 151 GGGGATGTCACGACCGCTGTTCCGGGAAGCTATCATTCAATTGAACAGTC 200
||...|||.||..||||.||.|||||||||||||||||..|.||.|||||
RBAM_003260__ 10 GGCAGTGTGACATCCGCCGTCCCGGGAAGCTATCATTCTTTAGACCAGTC 59
BSNT_00532 201 TCCGGTCAGCTTGATCAGC-TTTTTTACTTCTCTACAGGATGGAATG--- 246
|||.||||||..|||| || ||||||||..|..|.|||||.||.|||
RBAM_003260__ 60 TCCTGTCAGCCCGATC-GCTTTTTTTACCGCGATTCAGGAAGGGATGACA 108
BSNT_00532 247 -GTTGGATCAGCACCCATCATCTTTCTGATTCTATTCACAGGCGGCACCA 295
|| ||.||.||.||.||.|||.|.||.||.||.||.||||||||||
RBAM_003260__ 109 AGT----TCCGCGCCGATTATTTTTTTAATCCTGTTTACGGGCGGCACCA 154
BSNT_00532 296 TTGCTATTCTAGAAAAAACGGGTGCCATCAATGGCCTGATTTACAATGTC 345
||||.|||.|.||.||||||||.|||||||||||..||||....||||||
RBAM_003260__ 155 TTGCGATTTTGGAGAAAACGGGCGCCATCAATGGATTGATCAGTAATGTC 204
BSNT_00532 346 ATCAGCAAATTCCGCACAAAGCAATTATTATTTATTTGTATTGTCGGCGC 395
|||||.|..|||||||||||.||..|..|.||||||...||||||||..|
RBAM_003260__ 205 ATCAGTACGTTCCGCACAAAACAGCTGCTGTTTATTGCGATTGTCGGATC 254
BSNT_00532 396 ATTGTTCTCCATTCTCGGAACAACCGGGATTGTCGTGAATTCAGTTATCG 445
..|.||.||.||.|||||.||||||||.||.|||||.|||||.||.||||
RBAM_003260__ 255 TCTATTTTCGATCCTCGGCACAACCGGCATCGTCGTTAATTCCGTGATCG 304
BSNT_00532 446 GTTTTATCCCCATCGGCCTCATTGTGGCACGATCCTTAAAATGGGACGCA 495
|||||||.||.||||||||.||.||.||.||.||..|.|||||||||||.
RBAM_003260__ 305 GTTTTATTCCGATCGGCCTGATCGTCGCCCGCTCGCTGAAATGGGACGCC 354
BSNT_00532 496 GTCGCGGGAGCCGCTGTTATTTACATCGGCTGCTACGCTGGATTTAACTC 545
||.||.|||||.||.||.|||||.|||||||||||.||.||.||||||.|
RBAM_003260__ 355 GTGGCCGGAGCGGCCGTCATTTATATCGGCTGCTATGCCGGGTTTAACGC 404
BSNT_00532 546 CACCATATTATCACCGTCACCGCTCGGTTTATCACAATCAATCGCGGAGC 595
.||.||.||||||||.|||||||||||.|||||||||...||||||||||
RBAM_003260__ 405 GACGATTTTATCACCTTCACCGCTCGGGTTATCACAAAGCATCGCGGAGC 454
BSNT_00532 596 TCCCTCTTTTTTCTGGAATCGGCCTGCGAGTTGTGATATACATATGCTTT 645
|.||.||.|||||.||.|||||||||||..|||...|.|||||.||.|||
RBAM_003260__ 455 TGCCGCTGTTTTCCGGTATCGGCCTGCGGATTGCCGTCTACATTTGTTTT 504
BSNT_00532 646 TTGCTGTCTTCTATTATTTATATCTATTTGTATACGAGAAAATTAAAAAA 695
.||.|.||.||||||.|.|||||.|||..|||||||||||||.|.|.|||
RBAM_003260__ 505 CTGTTATCATCTATTTTATATATTTATCGGTATACGAGAAAACTCAGAAA 554
BSNT_00532 696 ATCAAAAGATGCCAGTGTG-TTAGGAACAGATTGGTTCCCTGCGGCAGG- 743
|.||||.||.||||||.|| |..||||| ||||||||.||.||||||||
RBAM_003260__ 555 AGCAAAGGACGCCAGTCTGCTGGGGAAC-GATTGGTTTCCGGCGGCAGGT 603
BSNT_00532 744 --AAT------GG--GCGAAGCCGGTAAAGAAGAAGATCAGCCA-GTGCC 782
|.| || .|..|||||| ||.|.||| || ||.||
RBAM_003260__ 604 TCACTCCCGCAGGTTTCTGAGCCGG---AGGACAAG------CATGTCCC 644
BSNT_00532 783 GTTTACCGTTCGCCATAAGCTGATTTTGGCTGTGGCGGGACTCTCACTTG 832
|||||||||.||||||||..|||||.|||||||.||||...|.||.||||
RBAM_003260__ 645 GTTTACCGTCCGCCATAAATTGATTCTGGCTGTTGCGGCTTTGTCGCTTG 694
BSNT_00532 833 TCGGATTTTTATACGGCGCTTTGAAGCTTGGCTGGTCAGATTCCCAAATG 882
.|||.||||||||||||||..|.|..|||||||||||.|||||..|.|||
RBAM_003260__ 695 CCGGCTTTTTATACGGCGCGCTTACTCTTGGCTGGTCTGATTCAGAGATG 744
BSNT_00532 883 GCTGCGACATTTATTTTTATTTCTGTCCTTGCCGGTTTAATAGGCAGACT 932
||.||....||.||||||||.||..||.|..|.||..|.||.|...||.|
RBAM_003260__ 745 GCCGCCGTGTTCATTTTTATCTCAATCGTGTCAGGCCTGATTGCGGGAAT 794
BSNT_00532 933 TGCGGCGAACGATATTGCCAAAACCTTCATTACGGGCTGCCAAAGCCTTG 982
.|||||.||.|||||.||.|||||.||.|||||.|||||.||..|.||.|
RBAM_003260__ 795 GGCGGCAAATGATATCGCAAAAACGTTTATTACAGGCTGTCAGGGGCTCG 844
BSNT_00532 983 TATATGGGGCGCTGATTGTCGGGATGGCACGAAGCATTTCCGTTATCCTT 1032
|.||.||.||||||||.|||||.|||||..|||||||||||||||||||.
RBAM_003260__ 845 TTTACGGTGCGCTGATCGTCGGAATGGCGAGAAGCATTTCCGTTATCCTG 894
BSNT_00532 1033 GAAAATGGAAAGCTTCTCGATACTGTCGTCAATGCTTTGGCTTCACTTTT 1082
|||.||||||||||.||.|||||.||.|||||||...|.||.|||||..|
RBAM_003260__ 895 GAACATGGAAAGCTGCTTGATACGGTAGTCAATGGACTAGCGTCACTGCT 944
BSNT_00532 1083 GGACGGATTCAGCCCGATTGCCGGGGCAATCGGCATGTATATCGCCAGTG 1132
|.||||.|||||||||||.||.||.||.|||||.||||||||..||||.|
RBAM_003260__ 945 GCACGGTTTCAGCCCGATGGCAGGCGCCATCGGAATGTATATTTCCAGCG 994
BSNT_00532 1133 CGCTGCTTCATTTTCTCATCTCTTCAGGGTCTGGCGAAGCCGTTGTATTT 1182
|.||||||||||||||.||.||.||.||.||.||.||.||.||.||||||
RBAM_003260__ 995 CCCTGCTTCATTTTCTGATTTCATCGGGCTCAGGGGAGGCGGTCGTATTT 1044
BSNT_00532 1183 ATTCCAATCCTGGCGCCGCTCGCTGATTTGATGGAAATCACGAGACAGGT 1232
|||||.|||.||||||||||.||.|||.||||||..||||||||||||||
RBAM_003260__ 1045 ATTCCGATCTTGGCGCCGCTTGCCGATCTGATGGGCATCACGAGACAGGT 1094
BSNT_00532 1233 TGCGGTGGAGGCGGTTATGCTTGGAGAAGGGGTCGTCAACTGTGTGAACC 1282
.|||||.||.|||||.|||||.||||||||.|||||.||||||||.||.|
RBAM_003260__ 1095 CGCGGTTGAAGCGGTCATGCTCGGAGAAGGCGTCGTAAACTGTGTCAATC 1144
BSNT_00532 1283 CGACATCCGGCGTTCTCATGGCAGTGCTTGCCGCCAGCGGTATTCCGTAT 1332
||||.|||||.||.||.|||||.||.||.||.||||||||.||||||||.
RBAM_003260__ 1145 CGACTTCCGGTGTGCTGATGGCCGTACTGGCTGCCAGCGGCATTCCGTAC 1194
BSNT_00532 1333 GTCAAGTGGCTGCGGTTTATGGTGCCGCTTGCTCTGATTTGGTTCTTGAT 1382
||.||||||||.||.||.|||.|.|||||.||.|||||||||||..|.||
RBAM_003260__ 1195 GTAAAGTGGCTTCGCTTCATGATTCCGCTGGCGCTGATTTGGTTTGTCAT 1244
BSNT_00532 1383 CGGGCTTGTCTTTATCGTG-ATCGGCGTCATGATCAATTGGGGGCCGTTT 1431
|||.||.||.|||||| || ||.||||||.|||||||||||||.||.|.|
RBAM_003260__ 1245 CGGTCTCGTATTTATC-TGCATAGGCGTCCTGATCAATTGGGGTCCTTAT 1293
BSNT_00532 1432 TAA 1434
|||
RBAM_003260__ 1294 TAA 1296
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.