Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00466 and RBAM_002930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00466___phoD.1.9828.seq
# -bsequence dna-align/RBAM_002930___phoD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00466___phoD-RBAM_002930___phoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00466___phoD-RBAM_002930___phoD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00466___phoD
# 2: RBAM_002930___phoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1768
# Identity: 1375/1768 (77.8%)
# Similarity: 1375/1768 (77.8%)
# Gaps: 32/1768 ( 1.8%)
# Score: 5339.0
#
#
#=======================================
BSNT_00466___ 1 ATGGCATACGACAGTCGTTTTGATGAATGGGTACAGAAACTGAAAGAGGA 50
|||.||.|.|||.|.|||||.|||||||||.|..||.||.||.|..|..|
RBAM_002930__ 1 ATGACACATGACGGCCGTTTAGATGAATGGATCAAGGAATTGGAGAACAA 50
BSNT_00466___ 51 AAGCTTTCAAAACAATACGTTTGACCGCCGCAAATTTATTCAAGGAGCGG 100
|||||||||.|||||||||||||||||||||..||||||.||.||.||.|
RBAM_002930__ 51 AAGCTTTCAGAACAATACGTTTGACCGCCGCGCATTTATACAGGGCGCCG 100
BSNT_00466___ 101 GGAAGATTGCAGGACTTTCTCTTGGATTAACGATTGCCCAGTCGGTTGGG 150
|.||.||.||.||.|||||.||.||.|||.||||.||.||.||..|.||.
RBAM_002930__ 101 GTAAAATCGCCGGTCTTTCCCTCGGGTTAGCGATCGCGCAATCCATCGGC 150
BSNT_00466___ 151 GCCTTTGAAGTAAATGCTGCGCCTAAATTCTCAAGCTATCCGTTTACATT 200
||.||||||||.|||||.||.||.|||||.||||.|||||||||.||..|
RBAM_002930__ 151 GCGTTTGAAGTGAATGCCGCTCCGAAATTTTCAAACTATCCGTTCACCCT 200
BSNT_00466___ 201 AGGGGTAGCGTCAGGTGATCCGCTTTCTGACAGTGTCGTGCTTTGGACAC 250
.||.|||||.||.||.||||||||.||||||||.|||.|.||.|||||.|
RBAM_002930__ 201 CGGCGTAGCTTCCGGCGATCCGCTGTCTGACAGCGTCATTCTCTGGACGC 250
BSNT_00466___ 251 GTCTGGCACCAGATCCGCTGAATGGCGGGGGAATGCCGAAGCAAGCAGTG 300
||||.||.||.||.|||||||||||.||.||.|||||||||||.||.|||
RBAM_002930__ 251 GTCTTGCCCCTGACCCGCTGAATGGGGGCGGCATGCCGAAGCAGGCCGTG 300
BSNT_00466___ 301 CCTGTCAAATGGGAGGTCGCAAAGGATGAGCATTTCCGCAAAATCGTAAG 350
||.||.||||||||..||||....|||||.|||||.||..|.|||||.|.
RBAM_002930__ 301 CCGGTAAAATGGGAAATCGCCGCTGATGAACATTTTCGTCACATCGTCAA 350
BSNT_00466___ 351 AAAAGGCACTGAAATGGCTAAACCAAGTCTTGCCCATTCCGTTCATGTGG 400
|...||.||.||||||||.||.||.|.|||.|..||.|||||.|||||.|
RBAM_002930__ 351 ACGCGGAACGGAAATGGCCAAGCCGAATCTCGGACACTCCGTCCATGTCG 400
BSNT_00466___ 401 AAGCGGACGGGCTTGAGCCAAACAAAGTGTACTATTACCGTTTCAAAACC 450
|.|||||||||||..||||.||.|||||||||||||||||.||.||||.|
RBAM_002930__ 401 AGGCGGACGGGCTCAAGCCCAATAAAGTGTACTATTACCGGTTTAAAAGC 450
BSNT_00466___ 451 GGTCATGAACTAAGCCCTGTCGGAAAAACAAAAACACTGCCTGCCCCTGG 500
||.|||||.||.||.||.|||||....||.|||||.|||||.||.||.||
RBAM_002930__ 451 GGGCATGAGCTCAGTCCCGTCGGCCGGACGAAAACGCTGCCCGCTCCCGG 500
BSNT_00466___ 501 CGCCAATGT-GCCGCAAATGACCTTTGCATTTGCTTCCTGCCAGCAATAT 549
|||..|.|| .|||| .|||||.|||||||||||.||.||||||||.|||
RBAM_002930__ 501 CGCTGACGTATCCGC-CATGACGTTTGCATTTGCCTCATGCCAGCAGTAT 549
BSNT_00466___ 550 GAGCACGGATATTATACGGCCTACAAGCATATGGCAAAGGAAAAGCTTGA 599
||.|||||.|||||||||||.||.||.||||||||.||||||||||||||
RBAM_002930__ 550 GAACACGGCTATTATACGGCATATAAACATATGGCGAAGGAAAAGCTTGA 599
BSNT_00466___ 600 TCTTGTCTTCCATCTCGGTGATTACATATATGAATACGGCCCAAATGAAT 649
|||.||.|||||||||||.||||||||.|||||||||||.||.||.||||
RBAM_002930__ 600 TCTCGTATTCCATCTCGGAGATTACATTTATGAATACGGACCGAACGAAT 649
BSNT_00466___ 650 ATGTATCAAAAACAGGCAATGTCCGCACGCACAACAGCGCGGAAATCATT 699
||||.||||||||.||.||||||.|.|||||||.||||||.|||.|...|
RBAM_002930__ 650 ATGTGTCAAAAACGGGAAATGTCAGGACGCACAGCAGCGCTGAAGTGTAT 699
BSNT_00466___ 700 ACGCTGCAAGACTATCGGAACCGTCACGCTCAATACCGTTCTGACGCCAA 749
||.|||..|||.||.||.||||||||.||.||||||||.|||||.|||||
RBAM_002930__ 700 ACACTGTCAGATTACCGCAACCGTCATGCCCAATACCGCTCTGATGCCAA 749
BSNT_00466___ 750 TCTTAAAGCTGCACATGCGGCATTCCCTTGGGTTGTAACTTGGGATGACC 799
|||.|||||.||.||.||.|||||.||.|||||.||.||.|||||.||.|
RBAM_002930__ 750 TCTGAAAGCCGCCCACGCCGCATTTCCGTGGGTCGTGACGTGGGACGATC 799
BSNT_00466___ 800 ATGAAGTTGAAAACAACTATGCCAATAAAATACCTGAAAAAGGACAGTCG 849
||||.||.||||||||.||||||||||..||.|||||||||||.||.||.
RBAM_002930__ 800 ATGAGGTGGAAAACAATTATGCCAATATTATCCCTGAAAAAGGCCAATCC 849
BSNT_00466___ 850 GTTGAAGCATTCGTGCTCCGTCGCGCGGCAGCATACCAGGCATACTATGA 899
||||||||.||.||||||.|..|.||.|||||.||||||||.||.|||||
RBAM_002930__ 850 GTTGAAGCGTTTGTGCTCAGGAGGGCCGCAGCTTACCAGGCTTATTATGA 899
BSNT_00466___ 900 ACATATGCCGCTC---CGCATTTCCTCTTTGCCGAATGGCCCAGATATGC 946
||||||||||||| ||||| .||.||||||||.||.||.|||||||
RBAM_002930__ 900 ACATATGCCGCTCAGGCGCAT---GTCATTGCCGAACGGTCCTGATATGC 946
BSNT_00466___ 947 AGCTGTACCGGCACTTTACGTACGGAAACCTGGCGTCCTTCAATGTGCTT 996
.|||||||.||||.|||.|.||.||.||..||||.||.||||||||||||
RBAM_002930__ 947 GGCTGTACAGGCAATTTTCTTATGGCAATTTGGCATCGTTCAATGTGCTT 996
BSNT_00466___ 997 GATACCCGCCAGTACAGGGACGACCAAGCCAATAACGACGGCAATAAGCC 1046
|||||..|.||||||||.||.||.||.|||||...||||||.||||||||
RBAM_002930__ 997 GATACAAGACAGTACAGAGATGATCAGGCCAACGGCGACGGGAATAAGCC 1046
BSNT_00466___ 1047 GCCTTCTGATGAATCGCTCAATCCGAATCGGACCCTGCTTGGAAAAGAAC 1096
||||||||||||.|.|....|.|||||.||.||..||.|.||.|.|||||
RBAM_002930__ 1047 GCCTTCTGATGAGTGGAGAGACCCGAAGCGCACATTGATGGGGACAGAAC 1096
BSNT_00466___ 1097 AGGAGCAGTGGCTCTTCAACAATTTGGGCAGCTCGACTGCCCACTGGAAT 1146
|||||||.||||||||||..|||||.|.|..|||.|..||..|.||||||
RBAM_002930__ 1097 AGGAGCAATGGCTCTTCAGAAATTTAGCCGCCTCAAAAGCGAAGTGGAAT 1146
BSNT_00466___ 1147 GTGCTGGCGCAGCAGATTTTCTTTGC-CAAGTGGAATTTCGGGACAAGCG 1195
||||||||||||||.||.||.||.|| ||| |||||||||||.||||.||
RBAM_002930__ 1147 GTGCTGGCGCAGCAAATCTTTTTCGCGCAA-TGGAATTTCGGAACAACCG 1195
BSNT_00466___ 1196 CAAGCCCGATCTACAGCATGGATTCGTGGGACGGCTACCCGGCTCAGCGC 1245
|.|..|||||.||||||||||||||.|||||||||||||||||||||||.
RBAM_002930__ 1196 CCAATCCGATATACAGCATGGATTCATGGGACGGCTACCCGGCTCAGCGG 1245
BSNT_00466___ 1246 GAACGGGTGATCAATTTCATTAAAAGCAAAAATCTGAATAATGTTGTCGT 1295
||.|||||.||||||||.||.|||||||||||.|||||.|||||..||||
RBAM_002930__ 1246 GAGCGGGTCATCAATTTTATAAAAAGCAAAAACCTGAACAATGTCATCGT 1295
BSNT_00466___ 1296 ACTGACAGGTGATGTACACGCAAGCTGGGCATCGAATTTGCATGTCGATT 1345
.|||||.||||||||.||||||||||||||.||.||..|||||..|||||
RBAM_002930__ 1296 GCTGACGGGTGATGTTCACGCAAGCTGGGCGTCAAACCTGCATACCGATT 1345
BSNT_00466___ 1346 TCGAGAAGACAAGTTCAAAAATATTCGGAGCCGAATTTGTCGGAACCTCG 1395
|..|..|.||.|.||||||.||.||||||||||||||.|||||.|||||.
RBAM_002930__ 1346 TTAATCAAACGAATTCAAAGATTTTCGGAGCCGAATTCGTCGGGACCTCC 1395
BSNT_00466___ 1396 ATCACATCCGGAGGAAACGGCGCCGATAAGCGGGCGGATACGGACCAAAT 1445
||.|||||.|||||||||||.||.|||||.|||||.||||||||.||.||
RBAM_002930__ 1396 ATTACATCTGGAGGAAACGGGGCGGATAAACGGGCCGATACGGATCAGAT 1445
BSNT_00466___ 1446 TTTAAAAGAAAATCCGCACATCAAGTTCTTTAACGACTATCGCGGATATG 1495
.||||||.||||.|||||.||.|||||.||.|||||.||.|||||.||||
RBAM_002930__ 1446 CTTAAAACAAAACCCGCATATTAAGTTTTTCAACGATTACCGCGGCTATG 1495
BSNT_00466___ 1496 TCCGCTGTACAGTGACGCCTCACCAGTGGAAAGCCGATTATCGGGTGATG 1545
||||||||||.|||||.|||..|||.||||.|||.|||||..|.|||.||
RBAM_002930__ 1496 TCCGCTGTACGGTGACCCCTGCCCAATGGAGAGCGGATTACAGAGTGGTG 1545
BSNT_00466___ 1546 CCGTTTGTGACCGAGCCGGGCGCAGCCATTTCCACGCGGGCTTCATTCGT 1595
||||..|||||.||||||||.||.|...|.||||||||||||||||||.|
RBAM_002930__ 1546 CCGTACGTGACGGAGCCGGGGGCTGAGGTATCCACGCGGGCTTCATTCAT 1595
BSNT_00466___ 1596 TTACCAGAAAGACCAAACTGGGTTGAGAAAGGTATCATCCACAACAATCC 1645
|||.|||||||||||.||.|||.|..|.|||||.|| ||.
RBAM_002930__ 1596 TTATCAGAAAGACCAGACGGGGATTCGGAAGGTCTC-----------TCA 1634
BSNT_00466___ 1646 A-----------AGGCGGGGTGAAGCAATCCGATGAGGTCGAAGAGGATC 1684
| ||||||.||.|||||.||..|.|||||.||||||||||
RBAM_002930__ 1635 AGCTGCGGTTGCAGGCGGTGTAAAGCAGTCAAACGAGGTGGAAGAGGATC 1684
BSNT_00466___ 1685 GTTTCTTTGCGCACAACAAAGCCCACGAAAAACAAATGATTAAGAAGCGG 1734
|||||||.||.||.|||||.||.||.|||||.|||||||..|||||.|||
RBAM_002930__ 1685 GTTTCTTCGCCCATAACAATGCGCATGAAAAGCAAATGAGAAAGAAACGG 1734
BSNT_00466___ 1735 GCAAAAATCACGAATTAA 1752
||.||||||.|..|.|||
RBAM_002930__ 1735 GCCAAAATCTCACAATAA 1752
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