Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00430 and RBAM_002790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00430.1.9828.seq
# -bsequence dna-align/RBAM_002790___ybgH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00430-RBAM_002790___ybgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00430-RBAM_002790___ybgH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00430
# 2: RBAM_002790___ybgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1450
# Identity: 952/1450 (65.7%)
# Similarity: 952/1450 (65.7%)
# Gaps: 248/1450 (17.1%)
# Score: 3623.5
#
#
#=======================================
BSNT_00430 1 ATGCAGCAAATCCTGGAACAT---ATCG--TGGGTATCGCAAATGATCTT 45
||||||.||.||||.|||.|| |||| |.| |||||||||.||
RBAM_002790__ 1 ATGCAGGAATTCCTTGAAAATGTAATCGGCTCG-----GCAAATGATTTT 45
BSNT_00430 46 TTGTGGTCAAAGTTATTAATTGTTTTGCTCCTTTCTCTGGGAATCTATTT 95
||.||||||||..|.|||||.||..||||.||||||||||||.|.|.|||
RBAM_002790__ 46 TTATGGTCAAAACTGTTAATCGTACTGCTTCTTTCTCTGGGACTGTTTTT 95
BSNT_00430 96 TACGTTCAGGCTTAAGTTTTTACAGGTTCGCATGCTGAAAGAAATGGTCA 145
|||||||||....|||..|.|.||.||.|||||||||||.||||||.||.
RBAM_002790__ 96 TACGTTCAGATCAAAGGGTCTGCAAGTCCGCATGCTGAAGGAAATGATCC 145
BSNT_00430 146 GGGTATT-AAGAGAAGGTGCTGCTTCCCGGTCGAAAAACACCATTTCTCC 194
||||.|| ||| |||||.||.||..|||||.|.|||||||.||||||.||
RBAM_002790__ 146 GGGTTTTGAAG-GAAGGCGCGGCCGCCCGGACAAAAAACAGCATTTCCCC 194
BSNT_00430 195 GTTTCAAGCCTTTTGCATCAGCATGGCGGCCCGTGTCGGAACGGGAAATA 244
||||||.||.|||||||||||.||||||||.|||||||||||.||.||||
RBAM_002790__ 195 GTTTCAGGCATTTTGCATCAGTATGGCGGCGCGTGTCGGAACCGGGAATA 244
BSNT_00430 245 TTACGGGCATTGCCATCGCCATTGCACTCGGCGGGCCCGGTGCAATCTTC 294
||||.||.||.|||||.||.||.|||||||||||.||.||.||.||.|||
RBAM_002790__ 245 TTACCGGAATCGCCATTGCGATCGCACTCGGCGGTCCGGGCGCTATTTTC 294
BSNT_00430 295 TGGATGTGGATTATCGCCATTATCGGATCAGCATCCAGCTTTGTGGAAAG 344
|||||||||||||||||..|.|||||.||.||.||.||||||||.|||||
RBAM_002790__ 295 TGGATGTGGATTATCGCAGTCATCGGTTCGGCTTCAAGCTTTGTTGAAAG 344
BSNT_00430 345 CACACTGGCTCAGATTTATAAAGTAAAAGATGTAAACGGCTTCCGCGGCG 394
|||.|||||.||.||||||||||||||||||..||||||.||||||||.|
RBAM_002790__ 345 CACGCTGGCCCAAATTTATAAAGTAAAAGATCAAAACGGATTCCGCGGGG 394
BSNT_00430 395 GGCCGGCGTATTACATGGAAAAAGGGCTGAACAAAAGGTGGATGGGCGCG 444
|.|||||.||||||||||||||.||.|||||.|||.|.||||||||||||
RBAM_002790__ 395 GCCCGGCCTATTACATGGAAAAGGGCCTGAAGAAACGCTGGATGGGCGCG 444
BSNT_00430 445 CTGTTCGCTGTGTTAATCACCTTATCGTTCGGTATCGTCTTCAACTCGGT 494
||||||||.||.||||||||..|.||.|||||..|.||.||.||.||.||
RBAM_002790__ 445 CTGTTCGCCGTATTAATCACACTGTCATTCGGGGTTGTTTTTAATTCCGT 494
BSNT_00430 495 TCAATCCAATACAGTCAGCCTTGCCTTTGAAAACGCGTTTGGCACAAACC 544
|||||||||||||.|||||.|.||||||.|||||||.||.|||||.|.||
RBAM_002790__ 495 TCAATCCAATACAATCAGCGTCGCCTTTCAAAACGCATTCGGCACCAGCC 544
BSNT_00430 545 GCCTGACATTGGGACTCATTTTAATTGCTGTATTCGGC-ACGATTATTTT 593
|.||.||||||||..|.||||||||.|..||.|||||| .|| |.||.||
RBAM_002790__ 545 GGCTTACATTGGGCATTATTTTAATCGTGGTTTTCGGCGGCG-TAATCTT 593
BSNT_00430 594 TGGCGGAGTCAAGCGCATTGCAAAGCTGGCTGAATCCATTGTCGTCGTAT 643
.|||||.|||||.||.|||||.||..||||.||||.|||.||.|||||.|
RBAM_002790__ 594 CGGCGGCGTCAAACGAATTGCGAAAATGGCGGAATACATCGTAGTCGTCT 643
BSNT_00430 644 TGGCTGTCCTGTATATCGGAGTTGCGTTTTTCGTCATTTTCACCAACATT 693
||||.||..|.||||||||.||.||.||.||.||||||.|.||.|||||.
RBAM_002790__ 644 TGGCCGTTTTATATATCGGTGTCGCTTTCTTTGTCATTCTGACGAACATC 693
BSNT_00430 694 ACGCAGCTGCCAGGTGTGCTTGCGCTAATCGTGAAAAATGCGTTTGGTTT 743
||.||..||||.||.||.||..||||||||||.|||||||||||.||..|
RBAM_002790__ 694 ACCCAATTGCCCGGCGTTCTGTCGCTAATCGTAAAAAATGCGTTCGGCAT 743
BSNT_00430 744 TGATCAGGCCGCCGGCGGGGCTTTGGGCGCGGCACTCATGCAAGGCGTCA 793
|||||||||.||.|||||.|||||.||.|||||..|.||||||||.||.|
RBAM_002790__ 744 TGATCAGGCAGCGGGCGGCGCTTTAGGTGCGGCCTTGATGCAAGGTGTAA 793
BSNT_00430 794 GACGGGGAATCTTTTCAAACGAAGCGGGAATGGGAAGCGCACCGAATGCC 843
||||.||.||.||.|||||.||||||||.|||||||||||.|||||.||.
RBAM_002790__ 794 GACGCGGGATTTTCTCAAATGAAGCGGGTATGGGAAGCGCTCCGAACGCG 843
BSNT_00430 844 GCTGCCACCGCCACAACAAGCCATCCCGTCAAACAGGGGCTGATCCAAGC 893
||.||.||.||.|||||.|||||.||.||.|||||||||||.||.||.||
RBAM_002790__ 844 GCGGCGACAGCTACAACGAGCCACCCGGTGAAACAGGGGCTCATTCAGGC 893
BSNT_00430 894 TTTTGGTGTACTGACAGATACACTGGTCATTTGTACAAGCACCGCCTTTA 943
.||.||.||.|||||.|||||.||.|||||||||||||||||.||..|||
RBAM_002790__ 894 ATTCGGCGTCCTGACGGATACGCTCGTCATTTGTACAAGCACGGCGCTTA 943
BSNT_00430 944 TCATCCTGTTTTCGGATGCCTATCATACTCCGGGTCTGAGCGGAATCGC- 992
||||..|.|||||.||.||.|||||....|||||.||||||||.|||||
RBAM_002790__ 944 TCATTTTATTTTCAGACGCGTATCACCAGCCGGGACTGAGCGGCATCGCG 993
BSNT_00430 993 CTTGACACAAGCCTCCCTCAGCTCCCATGTCGGATCATGGGCATCAGGCT 1042
||| .|.||.|||.||.|.|||...||||||||..|||||||.|||||.|
RBAM_002790__ 994 CTT-TCTCAGGCCGCCTTGAGCGATCATGTCGGCGCATGGGCTTCAGGTT 1042
BSNT_00430 1043 TTCTCG-CGATTC----TGATTTTGTTATTCGGATTCTGTGCTCTAATTG 1087
|.||.| || || ||.||||| |||||.|||.|.|||||.||.|
RBAM_002790__ 1043 TCCTTGCCG--TCTTAATGCTTTTG---TTCGGCTTCAGCGCTCTGATGG 1087
BSNT_00430 1088 GAAACTATTATTATGGCGAAACCAATATCGGCTTTTTGAACAAAAGCAAA 1137
|.|||||||||||.||.||||||||||||||.|||||.|.|.|.|.||||
RBAM_002790__ 1088 GCAACTATTATTACGGAGAAACCAATATCGGATTTTTAAGCCAGAACAAA 1137
BSNT_00430 1138 AAACTGATTTTTGTCTACCGTATCGGCGTGCTGGCAATGATCGTGTTTGG 1187
|||..|.|.||..|.|||||.|||.|||||||.|.||||.|..||||.||
RBAM_002790__ 1138 AAATGGCTGTTCATTTACCGCATCTGCGTGCTCGGAATGGTACTGTTCGG 1187
BSNT_00430 1188 CTGTGTTGCCAAAGTCCAGCTCGTCTAG---------------------- 1215
||||.||.|||||||||||||.||.|.|
RBAM_002790__ 1188 CTGTATTTCCAAAGTCCAGCTTGTGTGGGATATGGCTGACTTGTTCATGG 1237
BSNT_00430 1215 -------------------------------------------------- 1215
RBAM_002790__ 1238 GCTTAATGGTGGTCGTGAACTTAATCGCGATTTTCCTTCTGTCGAAAAAA 1287
BSNT_00430 1215 -------------------------------------------------- 1215
RBAM_002790__ 1288 GCGTTTGCCGCTTTGAGCGATTATGCCCGGCAAAAGAAAGCCGGAAAGGA 1337
BSNT_00430 1215 -------------------------------------------------- 1215
RBAM_002790__ 1338 CCCCGTCTTTTACAGAGATGTGCTCCCTGATGATGACGGGATCGACTGCT 1387
BSNT_00430 1215 -------------------------------------------------- 1215
RBAM_002790__ 1388 GGGAGTATTCAGACATCGCGAAAAGTGCGAAAGGCAAACACATTTCCTAA 1437
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