Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00058 and RBAM_000350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_00058___yaaN.1.9828.seq
# -bsequence dna-align/RBAM_000350___yaaN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00058___yaaN-RBAM_000350___yaaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00058___yaaN-RBAM_000350___yaaN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00058___yaaN
# 2: RBAM_000350___yaaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity: 810/1206 (67.2%)
# Similarity: 810/1206 (67.2%)
# Gaps: 132/1206 (10.9%)
# Score: 2597.5
#
#
#=======================================
BSNT_00058___ 1 ATGAACCGAGACCAAAGCGACC-TTCATATAGATGAATTATTGGCAGATC 49
|| |.||||| |||| ||| .||.|| |||
RBAM_000350__ 1 AT-------GGCCAAA--GACCGTTC----CGACGA--------CAG--- 26
BSNT_00058___ 50 CTTTTGGTGGTAACATAG-------AGAT-ACCAGGTTCGGAGGCTGTAA 91
|||.| |.|| |||||...| ||.|||
RBAM_000350__ 27 -------------CATGGGCGCCCAAAATGACCAGACCC-----CTCTAA 58
BSNT_00058___ 92 AAGCAGAGAAAGAGCAAGTACGGCTTGTTGATGTTCTTCCTGAGGAAAAC 141
| |||||..|||...||..||||.|||||
RBAM_000350__ 59 A---------------------GCTTGCAGATACGCTGTCTGAAGAAAA- 86
BSNT_00058___ 142 AAG-GAAAAAGCAATTCAGCTTGCTGGACAGATTGATCATAAAAATATGC 190
||| |||...|||.|||||||.||||.|.|..|.||.|.|.|.||.||||
RBAM_000350__ 87 AAGAGAAGCGGCACTTCAGCTCGCTGAAAAACTGGACCCTGAGAACATGC 136
BSNT_00058___ 191 AAAGCATTGTCTTATACGGTTCACAAGCTCAATCTAAACTGCTGAACTTT 240
||||||||||..|.|..||||||||.||.||..|.||.||.|||.|.|||
RBAM_000350__ 137 AAAGCATTGTTCTGTTTGGTTCACAGGCGCAGGCGAATCTTCTGGAATTT 186
BSNT_00058___ 241 TCTCATGATATGATTAATCATGTTCAAAAGAAGGATGTCGGGGAGATTGG 290
||.||....|||||..|.||.||.||||..||.||||..||.|||||.||
RBAM_000350__ 187 TCCCACACGATGATAGAGCACGTGCAAAGAAAAGATGCAGGAGAGATGGG 236
BSNT_00058___ 291 CGAAATACTTGG-AGAGCTGATGAAAAAGCTGGAGCAAGTAAATCCTGAT 339
..||||| |||| .||.|||||||..|||||.||.||.||.||.||||||
RBAM_000350__ 237 ACAAATA-TTGGCTGATCTGATGATGAAGCTTGACCAGGTCAACCCTGAT 285
BSNT_00058___ 340 GATCTCCA-ATCTAAGAA-AAAGGGTATTTTGGCACGCATGTTTGGAAGA 387
|||||.|| || .||||| ||||||| ||||.||.||..|||||..|||.
RBAM_000350__ 286 GATCTGCAGAT-GAAGAACAAAGGGT-TTTTCGCCCGGCTGTTTAAAAGG 333
BSNT_00058___ 388 GTATCAAGTTCTCTTCAAGAGGTGCTGTCTAAATACCAAAAGACCAGTGT 437
||.||..|||||.|.||.||.|||||.||.|||||.||||||||.|||||
RBAM_000350__ 334 GTGTCCGGTTCTGTGCAGGAAGTGCTTTCGAAATATCAAAAGACAAGTGT 383
BSNT_00058___ 438 GCAGATAGACAGAATCAGCTTGAA-GCTGGAGCACTCTAAAAA--TGCTT 484
||||||.|||.|.|||||| .||| ||||||.||.|||||||| ||||.
RBAM_000350__ 384 GCAGATTGACCGTATCAGC-AGAAGGCTGGAACATTCTAAAAATGTGCTG 432
BSNT_00058___ 485 TAATCAGTGACAACAAGCTGTTAGAGCAGTTATATGAAAAAAATAAAGAA 534
| |.||||||||.||..|||||||.|||.|.||.|...||||||||.|.
RBAM_000350__ 433 T--TGAGTGACAATAAATTGTTAGATCAGCTGTACGCCCAAAATAAACAG 480
BSNT_00058___ 535 TATTTTGCCGCGCTGA-------ATGTTTATATTGCTGCAGGAGAACTGA 577
||.||| .|||| ||| |||||.||.||.||.|||.|.|
RBAM_000350__ 481 TACTTT-----ACTGATTTAACTATG--TATATAGCAGCGGGGGAATTAA 523
BSNT_00058___ 578 AGCTGGAGGAATTAAAAACGAAAAC-AATTCCTGAACTGAAGCA--ACAG 624
|..|.||.||..|.||||| |||.| .||.||.||| |..||| |.|.
RBAM_000350__ 524 AATTAGATGAGCTGAAAAC-AAAGCTGATACCCGAA--GCGGCAAGAAAA 570
BSNT_00058___ 625 GCTGAAT--CGAGTGATCATAACCAAATGGCCGTTCAAGAGGTGAATGAT 672
||.|||| |.| ||.||.||.||||||||||..||.||.|||||||||
RBAM_000350__ 571 GCCGAATTACAA--GAACACAATCAAATGGCCGCGCAGGAAGTGAATGAT 618
BSNT_00058___ 673 TTAATTCAATTTGCTGACCGGTTAGATAAAAGGGTGCATGATTTGTTGCT 722
.|....||.|||||.|||||..|.|||||.||||||||||||.||.||||
RBAM_000350__ 619 CTTCGCCAGTTTGCCGACCGTCTGGATAAGAGGGTGCATGATCTGCTGCT 668
BSNT_00058___ 723 GAGCAGGCAAGTTACAATTCAAAGTGCACCGCAAATCAGGCTGATTCAAA 772
|||||||||..||||..||||.|||||.|||||||||.|.||||||||||
RBAM_000350__ 669 GAGCAGGCAGATTACGCTTCAGAGTGCGCCGCAAATCCGCCTGATTCAAA 718
BSNT_00058___ 773 ATACAAACCAAGCGTTAGCTGAAAAGATTCAGTCATCCATTGTGACAGCG 822
|.||.||.||.||..|.||.||.||.||||||||.||||||||.||.||.
RBAM_000350__ 719 ACACGAATCAGGCACTGGCAGAGAAAATTCAGTCCTCCATTGTTACGGCT 768
BSNT_00058___ 823 ATTCCGTTATGGAAAAATCAAGTTGCCATTGCGCTGACGCTTTTAAGGCA 872
|||||.||||||||.||||||||.|||||.||||||||||||.|.|||||
RBAM_000350__ 769 ATTCCTTTATGGAAGAATCAAGTCGCCATCGCGCTGACGCTTATGAGGCA 818
BSNT_00058___ 873 GCGCAATGCAGTGGATGCACAACAGAAAGTATCTGATACAACCAATGAGC 922
|||.|.|||.|..||||..||.|||||.|...|.|||||.||.|||.|..
RBAM_000350__ 819 GCGGAGTGCGGCAGATGTGCAGCAGAAGGCGGCGGATACGACAAATCAAT 868
BSNT_00058___ 923 TTTTGCTGAAAAATGCGGAGCTTTTAAAAACCAATACAATTGAAACTGCA 972
|..||||||||||.||.||.|||.|.|||||.|.||||.|.||.|||||.
RBAM_000350__ 869 TGCTGCTGAAAAACGCTGAACTTCTGAAAACAAGTACAGTCGAGACTGCG 918
BSNT_00058___ 973 CGGGCAAATGAAAGAGGCCTTGTTGATATAGATACCTTGAAGAAGGTGCA 1022
...||.|||||..|.||.||||||||....||.|||.|.||.||.|||||
RBAM_000350__ 919 AAAGCCAATGAGCGCGGACTTGTTGAAGCGGAAACCCTCAAAAAAGTGCA 968
BSNT_00058___ 1023 GGAAAGCTTAATAAGCACGCTTGAAGAAA-CACTGACTATACAAGAAGAA 1071
||||||||||.|.|||||.|||||||||| || ||.||||.|||||||||
RBAM_000350__ 969 GGAAAGCTTAGTCAGCACACTTGAAGAAATCA-TGTCTATTCAAGAAGAA 1017
BSNT_00058___ 1072 GGACGAATCAAACGCCGTCAGGCAGAAGAAGAGCTCATGATGATGGAAGG 1121
||..||||.||||||.|.|..||.||.||.|||||..|.||.||||||||
RBAM_000350__ 1018 GGCAGAATGAAACGCAGGCGTGCCGAGGAGGAGCTTGTTATCATGGAAGG 1067
BSNT_00058___ 1122 CGACCTGAAGCAAAAGCTGCTT-ACA---------------ATAAAGGAA 1155
|||..|.||..|.||||||||| |.| ||||.||..
RBAM_000350__ 1068 CGATTTAAAAAAGAAGCTGCTTGATATGAGGTCCGGCCGGGATAACGGCT 1117
BSNT_00058___ 1156 AGATAG 1161
||
RBAM_000350__ 1118 AG---- 1119
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