Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04664 and BSU31690
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04664___comP.1.22522.seq
# -bsequence dna-align/BSU31690___comP.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04664___comP-BSU31690___comP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04664___comP-BSU31690___comP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04664___comP
# 2: BSU31690___comP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2546
# Identity: 1683/2546 (66.1%)
# Similarity: 1683/2546 (66.1%)
# Gaps: 469/2546 (18.4%)
# Score: 5646.5
#
#
#=======================================
BSNT_04664___ 1 ---ATGTACAGATATATTAACGTCTATAAATATTTGTCTC--TAGTTTTT 45
|.|.|| |||| ||.|||.|| ||.| |||.|.|.
BSU31690___co 1 TTGAAGAAC-------TTAA----TAAAAAAAT---TCACAATAGCTGTA 36
BSNT_04664___ 46 ATCATTTTAAGT----TTTATTTATGTTATATACCTCTCGTATAGC--TT 89
||..||||.||| |||||.||.|.||||.|.|| ||||.| |.
BSU31690___co 37 ATTGTTTTGAGTATCCTTTATATAAGCTATACAACT----TATATCAGTA 82
BSNT_04664___ 90 TGCTT----TTAACATCTTCGTAGGTGCGGA-TGTAAAGATAAATGAACA 134
||..| |||..|| || ||| | |||||..||.||.|
BSU31690___co 83 TGAATGGAATTATTAT---------TG-GGACT---AAGATTCATAAAAA 119
BSNT_04664___ 135 GGGTAAGTTAGAGGTCACCAATGTTTTAGATTAT-ACAGATG-AATAT-- 180
.|.||| |.|| |||| |||| |.|||.| |||||
BSU31690___co 120 TGATAA-----AAGT---CAAT--------TTATGATAGAAGAAATATCG 153
BSNT_04664___ 181 ---TATTCAT---------------GTGTGAAAAAGGGAGATATCA---- 208
|.||||| ||.|||.|.|||||||.||||
BSU31690___co 154 GAATCTTCATATGGACAATTTGTTGGTCTGAGACAGGGAGACATCATATT 203
BSNT_04664___ 209 ---------------------TTC----------TTGAAGTAAATGGGGA 227
||| ||| |||||||||
BSU31690___co 204 AAAAATTAATAAAGAAAAACCTTCAGACAAACATTTG----AAATGGGGA 249
BSNT_04664___ 228 GA-------------AAGGCAGT---GATATTCAATTAAAAAGTGGAAGA 261
.| || |||| |||||| ||.|.|||||||
BSU31690___co 250 TATTTGAGTCATATTAA--CAGTCTGGATATT---TTGAGAAGTGGA--- 291
BSNT_04664___ 262 TTGGTCAATGTAGAAAGTTTAAT-TGTTGAGAGAGATAATAAATCATTTC 310
|.||||.||.|| | .|.|||| |||.
BSU31690___co 292 -----------AAAAAGATTCATCT-----CAAAGAT---------TTTG 316
BSNT_04664___ 311 ATTTA------CAAAATGTAAG-CCTAATCAGTGAAGAAAATTTATTTAT 353
||||| |.|||| || |||.|| |.|||.|||.|
BSU31690___co 317 ATTTAGTTACTCTAAAT---AGACCTTAT----------AGTTTTTTTCT 353
BSNT_04664___ 354 GTATC-TCATTCCTGTAATATCTTATTCAATCTGTTTATTTTGTA----- 397
|| || |..||||| ||.|| |.||||||||.||
BSU31690___co 354 GT-TCGTACTTCCT--------TTGTT-----TTTTTATTTTTTAAGCAT 389
BSNT_04664___ 398 ------TATTTTTTATTTA--TAGAATAAATAAAGTAAGAAAATCAACTT 439
||||||||||.|| ||.|.||||||||..|||.|.||||..|.
BSU31690___co 390 AATATGTATTTTTTATATACTTAAAGTAAATAAAAAAAGGAGATCATTTG 439
BSNT_04664___ 440 CTGCTTATATTTTAATTTTATTTTTGTTATTTG---TATCAGTAGCGTAT 486
||||.||||||.|.|||.|| ||||||||.| |.||..||||.|||
BSU31690___co 440 CTGCCTATATTCTTATTCTA---TTGTTATTAGACATTTCGATAGCATAT 486
BSNT_04664___ 487 GTAAGTGCATGTGGAGCAAGAAGAGGTGAAGAGATAAGCACT-----TAT 531
.||||||||.|.|||.||...||||| |.|.||||.||.| |||
BSU31690___co 487 ATAAGTGCAGGCGGACCATTTAGAGG---ACATATAATCAATCGGTATAT 533
BSNT_04664___ 532 CTGCTTGTTCTTACTTTAGTCAGTTGTCCGGTGTTATATATTCATTTTAT 581
...||||| |||||||..|...||.|||..|..|.|||.||||.|||||
BSU31690___co 534 TAACTTGT--TTACTTTTATATCTTCTCCTATTCTTTATCTTCAATTTAT 581
BSNT_04664___ 582 ATATAAATACTTTATAGAATTAGGAACAAAGTTATTCGAAAAGAAGATTT 631
|.|.|.||||.||..||||.||||.| |||.||.||.|||.||||..|.|
BSU31690___co 582 ACAAAGATACCTTGGAGAAATAGGTA-AAACTTTTTTGAATAGAATTTCT 630
BSNT_04664___ 632 TAATCATTATGTATATGCTCCCGCTAATAAATCTT-TTATTAGAGGACGT 680
| ||.|.|||||..|.||..||.|.|||||| .|||
BSU31690___co 631 T-----TTCTTTATATCATACCAATATTTAATCTTGGTAT---------- 665
BSNT_04664___ 681 TCTGAGTAAT----AGATTA---------AAATCTTCGGCTTTTTTGTCT 717
|||||..| |||.|| |.||.|| |.||||||..|.
BSU31690___co 666 --TGAGTTTTTTCAAGACTATTTACAAGTAGATATT--GATTTTTTAGCA 711
BSNT_04664___ 718 AATCTGAATTTGATTTCATTTTTTGTCCTAGTTCTTACTGTATCGATTCT 767
|.|||.||||||.|||| ||||| |.|.|| |.|||.||| .||||
BSU31690___co 712 ACTCTTAATTTGGTTTC---TTTTG--CAACTT-TGACTCTAT--TTTCT 753
BSNT_04664___ 768 TATCCATAAAGGGATA------------AGAAAATTTAAACAAAAAGAGC 805
|.|.| ||.|||| |..||||.||||.|....||||
BSU31690___co 754 TTTTC----AGCGATATACTTACATCTTAATAAATATAAATATGCTGAGC 799
BSNT_04664___ 806 AAAAGTCAATTTTGAAAGTCCTTGCTTAT----ACAAATA-TCTTTTCTT 850
|...||..|||.|.||| ||.||.|| |||||.| |||||..||
BSU31690___co 800 ATTCGTTTATTCTTAAA----TTACTAATTTTAACAAACACTCTTTCATT 845
BSNT_04664___ 851 TCAGTCCGTTTATTG-TCTTTTTTGCTGTTCC-ATATGTGTTTTTCGAG- 897
| |..|.|||.||| |.|||||||.|.|||| ||| .|.|||..||
BSU31690___co 846 T--GCGCCTTTTTTGATATTTTTTGTTCTTCCAATA---ATATTTACAGG 890
BSNT_04664___ 898 -AAGTATGTCT------CACCTTTTAG-TTTGGCTGCTTTTACACTTG-- 937
||.|||.|.| || |||| ||.|||..|.|| |||.|
BSU31690___co 891 TAATTATATTTTCCCGGCA----TTAGCTTCGGCGTCATT---ACTAGTA 933
BSNT_04664___ 938 -TTATACCTTTTTCTTTAGTATATCAATTTATGACTAAT-AGACTTTATA 985
|.||.||.||....||||||||.||||||.|..|.||| ||| |.|.|.
BSU31690___co 934 CTAATTCCGTTCGGGTTAGTATACCAATTTGTAGCCAATAAGA-TGTTTG 982
BSNT_04664___ 986 ATATCGACTTTGTTGTGGGGCGGCTTAAG-------TACTACGGTTTTTT 1028
||||.||.|||.|..|.|| ||| |||||.|.|.|..|
BSU31690___co 983 ATATAGAGTTTATCTTAGG-------AAGAATGAGATACTATGCTCTACT 1025
BSNT_04664___ 1029 AGCCATTACACCTACTATTATCGTAGT--GACCAT------------CTT 1064
.|||||.|.|||.|||.||.|..|||| |..||| .|.
BSU31690___co 1026 TGCCATGATACCAACTCTTCTAATAGTTGGTGCATTAGTTCTGTTTGATG 1075
BSNT_04664___ 1065 TAAT-TACATTCAG--CAAC---------CAAAGGATATCTTTTATTTAG 1102
|||| .||||.||| .||| ||||...|||.||||
BSU31690___co 1076 TAATGGACATCCAGATGAACCCTGTGCGTCAAACTGTATTTTTT------ 1119
BSNT_04664___ 1103 TTAAACTAACAATTGCAATATATGTTCTTATGTTTGCCGTTTTTTACTTT 1152
|..|||.|.|||||.||.||.|||||.|||
BSU31690___co 1120 --------------------TTCGTTGTCATGTTCGCTGTCTTTTATTTT 1149
BSNT_04664___ 1153 AAAGAAATCATTGATTTT-CGTTTCAAGTTGAAAAGATTTACAGAGAAAT 1201
|||||..||||.|||||| ..|||| .|||.|||.|.||..|.||.||||
BSU31690___co 1150 AAAGAGGTCATGGATTTTAAATTTC-GGTTAAAACGTTTCTCCGAAAAAT 1198
BSNT_04664___ 1202 TTAATTATCAAGATGGGATTTTTAAATTTACTCAGTTGATTAAGCAAGCA 1251
|.||.|||||.||..|.||||||||||.|||||||.|.||.|.|...|.|
BSU31690___co 1199 TCAACTATCAGGACAGTATTTTTAAATATACTCAGCTAATGAGGGGTGTA 1248
BSNT_04664___ 1252 TCATCAGTAGATCAAGTACTTAATCACTTTAAAAATACAATCCTAGAAGT 1301
.|.||..|..|.|||||..||||..|..|.||||||||.||.||.||.||
BSU31690___co 1249 ACTTCTCTTCAACAAGTTTTTAAAGAACTGAAAAATACTATACTGGATGT 1298
BSNT_04664___ 1302 AT------TAAACATAGATAATGC--TTGCGTGTA----TGATAATTCTA 1339
.| |||.||.||.|.||.| |||.|..|| ||| ||..
BSU31690___co 1299 TTTGCTTGTAAGCAAAGCTTATACCTTTGAGGTTACTCCTGA----TCAC 1344
BSNT_04664___ 1340 AAGGGGAAATCACCCTTCTTAG-TAAGAACAACTTTAAAGAT-------- 1380
||.|.||.| ||.|||| ||||.| |.|||.|
BSU31690___co 1345 AAAGTGATA------TTTTTAGATAAGCA------TGAAGTTGGACCGGA 1382
BSNT_04664___ 1381 CTG--ACTTATAAAAATCATGAGCAATATGTGAAAAATTTTTCTGGTGAT 1428
||| |.||.| ||||.|||.|||.|| ||||..|..||...||.
BSU31690___co 1383 CTGGAATTTTT----ATCAAGAGGAATTTG---AAAACGTAACTTCAGAA 1425
BSNT_04664___ 1429 ATCGGTAAAATTAAAGAGTTTAAACAAGGTTTTATTATTAAAATAGGTGA 1478
||.||.|||||||.|||..|.||.|||||.|||.||||.|||.|.|||||
BSU31690___co 1426 ATTGGGAAAATTATAGAAGTCAATCAAGGCTTTCTTATGAAAGTTGGTGA 1475
BSNT_04664___ 1479 ACGAGGAGACAGATCATTTTTAGTACTCTGTTTCTCAAGTTATAATACTT 1528
||||||.|..||.||.|.|.|..|.||.|||||.|| |||||
BSU31690___co 1476 ACGAGGCGGTAGTTCTTATGTTCTGCTTTGTTTATC------TAATA--- 1516
BSNT_04664___ 1529 TTAA---------GTTAACAAGGGATGAAATTGCATGGCTTCAAACATTA 1569
|||| |.|||||.|.||||||||..|.|||||..|||||.|.
BSU31690___co 1517 TTAACACTCCCCGGCTAACACGTGATGAAATATCGTGGCTGAAAACACTG 1566
BSNT_04664___ 1570 GCATTTTATACAAATGTCTCATTGGAAAACGTTATGAAAATCGAAGAATT 1619
.|.||||||||||.|||.||..|||||||.||..||.|.||.||.||..|
BSU31690___co 1567 TCTTTTTATACAAGTGTGTCCATGGAAAATGTCCTGCATATTGAGGAGCT 1616
BSNT_04664___ 1620 GATGGTGCATCTTG-AGGATTTAAAACAACAAGAATCCAACCCCGTATGG 1668
.||||..||| ||| ||||.|||||||||.|.|.|.||||||||.|.|||
BSU31690___co 1617 CATGGAACAT-TTGAAGGACTTAAAACAAGAGGGAACCAACCCCATCTGG 1665
BSNT_04664___ 1669 CTCAAAAAACTCATGTACACGATCGAGGAAAAACAACGCTC-GGATCTCG 1717
||.|||||.||.||||...|.|||||.||||||||.||.|| ||| ||||
BSU31690___co 1666 CTGAAAAAGCTAATGTTTGCAATCGAAGAAAAACAGCGTTCAGGA-CTCG 1714
BSNT_04664___ 1718 CCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAAACGC 1767
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 1715 CCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAAACGC 1764
BSNT_04664___ 1768 CAGTGTGAGCTGTTTTTGGGTGATTTTAAGAAGGGTGATAATCCGTGCCG 1817
||||||||||||||||||||||||||.|||||||.|||||||||||||||
BSU31690___co 1765 CAGTGTGAGCTGTTTTTGGGTGATTTCAAGAAGGATGATAATCCGTGCCG 1814
BSNT_04664___ 1818 TGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCTGATG 1867
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 1815 TGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCTGATG 1864
BSNT_04664___ 1868 TGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 1865 TGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTG 1914
BSNT_04664___ 1918 TATGATCTTGGGCTGGTCAAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCA 1967
|||||||||||..||||.||||||||||||||||||||||||||||||||
BSU31690___co 1915 TATGATCTTGGATTGGTGAAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCA 1964
BSNT_04664___ 1968 GGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTACGGCTT 2017
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 1965 GGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTACGGCTT 2014
BSNT_04664___ 2018 CCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTT 2067
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 2015 CCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTT 2064
BSNT_04664___ 2068 CTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGATTATGCT 2117
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 2065 CTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGATTATGCT 2114
BSNT_04664___ 2118 CATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGATGGCGTAG 2167
|||||||||||||||||||||||||||||||||||||||.||||||||.|
BSU31690___co 2115 CATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGACGATGGCGTTG 2164
BSNT_04664___ 2168 GATTTGATCAGGAAAAGAATACTGAGCATTCCATGAGCATGGGGCTTTCT 2217
|.||||||||.|||||.|||||||||||||||||||||||||||||||||
BSU31690___co 2165 GGTTTGATCAAGAAAAAAATACTGAGCATTCCATGAGCATGGGGCTTTCT 2214
BSNT_04664___ 2218 GGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGATTGAAAC 2267
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 2215 GGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGATTGAAAC 2264
BSNT_04664___ 2268 AAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA 2313
||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co 2265 AAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA 2310
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