Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02939 and BSU17750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:15
# Commandline: needle
# -asequence dna-align/BSNT_02939.1.22522.seq
# -bsequence dna-align/BSU17750___yndD.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02939-BSU17750___yndD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02939-BSU17750___yndD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02939
# 2: BSU17750___yndD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1563
# Identity: 893/1563 (57.1%)
# Similarity: 893/1563 (57.1%)
# Gaps: 654/1563 (41.8%)
# Score: 4391.0
#
#
#=======================================
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 1 ATGATGAGGTGGCGGAACAATCAGTACAAAACACAGAAGCAGCATAAATC 50
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 51 AGATTATTCGACAGCTGAAAAGCAGGATCAGGATGTGTTAACCGGTAACA 100
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 101 TCGGATACGACTTAGAACATGTAAAAAGAAAAATAGGACATAACGGGGAC 150
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 151 GTTCATTTCCGTGAGCTTGAAATCACTCAATTACATGTGAAAGCGGCATT 200
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 201 GATCTTTGTTGAAGGACTGTCTGATCAGGACTTGATTAATAAAGGACTAT 250
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 251 CAGTGTTAGTCATGAATCAACCTAATCAGGTAAGCGATGAAATTTCTCAA 300
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 301 TCCGGCAAAGGTATTTTAACTTCGAAACAGATAAAAAATCAAATCGTATC 350
BSNT_02939 0 -------------------------------------------------- 0
BSU17750___yn 351 AATCGGTGATGTCATAGATTCAGAGAAAATCAGTGATATCGTGTTGAATG 400
BSNT_02939 1 -----ATGGGTTCGACAGCGCTTCTCATCGATGGAATACCGCAGGCGTTT 45
|||||||||||||||||||||||||||||||||||||||||.|||
BSU17750___yn 401 TTTTCATGGGTTCGACAGCGCTTCTCATCGATGGAATACCGCAGGCCTTT 450
BSNT_02939 46 CTTCTGGGAACTGTAAAAAAACAAAATCGAAGTATCAAGGAGCCGCTTTC 95
||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU17750___yn 451 CTTCTGGGAACTGTAAAAAAACAAAATCGAAGTATCGAGGAGCCGCTTTC 500
BSNT_02939 96 AGAAGCGCTTGTCAGAGGACCGCGCACAGGCTTTACAGAAGAGTTGAGTA 145
||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU17750___yn 501 AGAAGCGCTTGTCAGAGGGCCGCGCACAGGCTTTACAGAAGAGTTGAGTA 550
BSNT_02939 146 CGAATACAGCTCTTTTGAGACAGCAAGGAAAAAATGATCAATTAACATTG 195
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 551 CGAATACAGCTCTTTTGAGACAGCAAGGAAAAAATGATCAATTAACATTG 600
BSNT_02939 196 CAGAGATTTGAAGTAGGAACACGATTAAAAAAGGATTTAATTATCGCTTA 245
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 601 CAGAGATTTGAAGTAGGAACACGATTAAAAAAGGATTTAATTATCGCTTA 650
BSNT_02939 246 TATGAATGACATTGCAGACCCAAAAGTAGTCGAGGAAGTAAGAAAAAGAG 295
||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU17750___yn 651 TATGAATGACATTGCAGATCCAAAAGTAGTCGAGGAAGTAAGAAAAAGAG 700
BSNT_02939 296 TGAGAGGGATTGAGATCGATCATTTGCCGGAGTCAGGCTACGTTGAACAG 345
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 701 TGAGAGGGATTGAGATCGATCATTTGCCGGAGTCAGGCTACGTTGAACAG 750
BSNT_02939 346 TTAATTGAGGATAATTATTTGAGCCCGTTCCCGCAAGTACAGAGTACAGA 395
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 751 TTAATTGAGGATAATTATTTGAGCCCGTTCCCGCAAGTACAGAGTACAGA 800
BSNT_02939 396 ACGTCCTGATCGCGTCATAAGCGAATTAATGGAAGGAAGAGTAGCTATTC 445
|||||||||||||||||||||||.||||||||||||||||||||||||||
BSU17750___yn 801 ACGTCCTGATCGCGTCATAAGCGGATTAATGGAAGGAAGAGTAGCTATTC 850
BSNT_02939 446 TGCTAGACGGCACTCCGTTTGCTTTGATTGTTCCAGTCACTTTCAGCATG 495
||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 851 TGCTTGACGGCACTCCGTTTGCTTTGATTGTTCCAGTCACTTTCAGCATG 900
BSNT_02939 496 ATGCTTCAATCGCCTGAAGATTATTATGAACGGTGGTTCCCGAGCTCGCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 901 ATGCTTCAATCGCCTGAAGATTATTATGAACGGTGGTTCCCGAGCTCGCT 950
BSNT_02939 546 CATCAGATTGCTGAGGTTCATCGCAGCAATGATAACATTATTCGCACCCG 595
||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU17750___yn 951 CATCAGATTGCTGAGGTTCATCGCAGCAATGATAACGTTATTCGCACCCG 1000
BSNT_02939 596 CTTTATATATATCATTTATTTCTTTTCATCCGGGGTTAATTCCGACCAAG 645
|||||||||||||||||||||||||||||||.||||||||||||||||||
BSU17750___yn 1001 CTTTATATATATCATTTATTTCTTTTCATCCTGGGTTAATTCCGACCAAG 1050
BSNT_02939 646 CTGGCAATTTCAATTTCCGGGACGCGCCAAGGTGTTCCGTTCCCATCCCT 695
|||||.|||||||||||||||||||||||||||||||||||||||||.||
BSU17750___yn 1051 CTGGCGATTTCAATTTCCGGGACGCGCCAAGGTGTTCCGTTCCCATCTCT 1100
BSNT_02939 696 CATTGAAGCCTTATTTATGGAAGTCGCGATCGAAATTTTAAGAGAAGCGG 745
.|||||||||||||||||||||||||||||.||||||||||||||.||||
BSU17750___yn 1101 GATTGAAGCCTTATTTATGGAAGTCGCGATTGAAATTTTAAGAGAGGCGG 1150
BSNT_02939 746 GGCTTCGTCTGCCAAAACCGATTGGACCCGCAATTGGCATAGTTGGCGGA 795
||||||||.||||||||||.||||||||||||||.|||||||||||||||
BSU17750___yn 1151 GGCTTCGTTTGCCAAAACCAATTGGACCCGCAATAGGCATAGTTGGCGGA 1200
BSNT_02939 796 TTAATCATC-GGGAAGCAGCTGTGCAGGCGGGGATTGTCAGTCCAATCAT 844
||||||||| ||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 1201 TTAATCATCGGGGAAGCAGCTGTGCAGGCGGGGATTGTCAGTCCAATCAT 1250
BSNT_02939 845 GGTCATTGTTGTTGCGCTCACAGCAATTTCTTCATTTGCCATCCCGCATT 894
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17750___yn 1251 GGTCATTGTTGTTGCGCTCACAGCAATTTCTTCATTTGCCATCCCGCATT 1300
BSNT_02939 895 ATAGCACAGGTATAG----------------------------------- 909
|||||||||||||||
BSU17750___yn 1301 ATAGCACAGGTATAGCACTTCGGATGCTTCGGTTTGGCGCGATGTTTTGT 1350
BSNT_02939 909 -------------------------------------------------- 909
BSU17750___yn 1351 GCGGCGGTGTTTGGATTGTTTGGAGTCATTATGTATTATCTGCTGCTAAG 1400
BSNT_02939 909 -------------------------------------------------- 909
BSU17750___yn 1401 CAGCCATGTCGTAAAGCTAAAGAGCTTTGGTGTGCCATACGCAAGTCCGG 1450
BSNT_02939 909 -------------------------------------------------- 909
BSU17750___yn 1451 CAGTGCCCTATCACTTAAAAGATTGGAAAGACTTTGTTATCAGAATGCCT 1500
BSNT_02939 909 -------------------------------------------------- 909
BSU17750___yn 1501 CTTTTAGTCATGAAGCGCCGGCCTAAAATGATGAATACAGATAATACAAA 1550
BSNT_02939 909 ------------- 909
BSU17750___yn 1551 ACGGGTGAAGTGA 1563
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