Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06291 and BPUM_3735
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:44
# Commandline: needle
# -asequence dna-align/BSNT_06291___spoIIIJ.1.24716.seq
# -bsequence dna-align/BPUM_3735___spoIIIJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06291___spoIIIJ-BPUM_3735___spoIIIJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06291___spoIIIJ-BPUM_3735___spoIIIJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06291___spoIIIJ
# 2: BPUM_3735___spoIIIJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity: 582/815 (71.4%)
# Similarity: 582/815 (71.4%)
# Gaps: 55/815 ( 6.7%)
# Score: 2053.0
#
#
#=======================================
BSNT_06291___ 1 ------------TTGTTGAAAAGGAGAATAGGGTTGC---TATTAAGTAT 35
||||||||||||.||.|| ||.| ||||.||..|
BPUM_3735___s 1 ATGGGAGGAATCTTGTTGAAAAGGCGATTA---TTACTAATATTTAGCTT 47
BSNT_06291___ 36 GGTTGGCGTATTCATGCTTTTGGCTGGATG--CTCGAGTGTGAAAGAGCC 83
|.||||||.|||..|.||.|||||.||||| |.|.| .|.||.||.||
BPUM_3735___s 48 GATTGGCGCATTGGTTCTATTGGCAGGATGTACACAA--ATTAATGAACC 95
BSNT_06291___ 84 GATTACTGCAGATAGTCCGCATTTCTGGGACAAGTACGTAGTATATCCAT 133
.||.||..||||||||..|...||||||.||...||..|.||.||.||..
BPUM_3735___s 96 AATCACATCAGATAGTAAGGGATTCTGGAACTCTTATATTGTTTACCCGC 145
BSNT_06291___ 134 TGTCTGAGCTCATTACGTATGTAGCGAAATTGACGGGAGATAACTACGGG 183
|.|||.|..|.||.|||||..|.||.||.|||||.||.||.||||||||.
BPUM_3735___s 146 TATCTCAATTAATCACGTACATGGCAAATTTGACTGGTGAAAACTACGGA 195
BSNT_06291___ 184 CTTTCAATTATTCTAGTTACCATTTTAATTCGTTTATTAATTTTACCGCT 233
.||.|.||.|||.|.||.||..|.|||||.||.||..|.||||||||..|
BPUM_3735___s 196 GTTGCGATCATTATTGTGACACTGTTAATCCGCTTGCTCATTTTACCATT 245
BSNT_06291___ 234 GATGATTAAGCAGCTGAGAAGTTCGAAAGCGATGCAGGCTTTACAGCCGG 283
.||||||||||||.|.||||||.|.|||||.|||||.||.||.|||||.|
BPUM_3735___s 246 AATGATTAAGCAGTTAAGAAGTACAAAAGCAATGCAAGCATTGCAGCCTG 295
BSNT_06291___ 284 AAATGCAAAAGCTTAAAGAAAAATACAGCTCAAAGGATCAAAAAACGCAG 333
||.||.||||||||...||||||||.|||||.||.||.||||||||.|||
BPUM_3735___s 296 AACTGAAAAAGCTTCGTGAAAAATATAGCTCTAAAGACCAAAAAACTCAG 345
BSNT_06291___ 334 CAAAAGCTTCAGCAGGAAACAATGGCTTTATTCCAAAAGCATGGTGTCAA 383
||..|||||||||||||||||||||||.|.||||||||..||||.|||||
BPUM_3735___s 346 CAGCAGCTTCAGCAGGAAACAATGGCTCTTTTCCAAAAAAATGGCGTCAA 395
BSNT_06291___ 384 TCCATTGGCGGGATGTTTCCCGATTTTGATCCAGATGCCGATTTTAATTG 433
||||||.||.|||||||||||||||||.||.||||||||.||..||||.|
BPUM_3735___s 396 TCCATTAGCAGGATGTTTCCCGATTTTAATTCAGATGCCAATCCTAATCG 445
BSNT_06291___ 434 GATTCTATCATGCGATCATGAGAACCCAG--GCGATTTCAGAGCATAGCT 481
||||||||||||||||.||||||| ||| |..|||..|.||||||..|
BPUM_3735___s 446 GATTCTATCATGCGATTATGAGAA--CAGCAGAAATTAAAAAGCATACAT 493
BSNT_06291___ 482 TCTTATGGTTTGACTTAGG-AGAAAAAGATCCTTACTATATTC----TTC 526
||||||||||||||||||| || ...||||||.| ||||| |.|
BPUM_3735___s 494 TCTTATGGTTTGACTTAGGCAG-TCCAGATCCAT----TATTCCTATTAC 538
BSNT_06291___ 527 CTATCGTTGCCGGTGTCGCTACATTTGTTCAGCAAAAACTGATGATGGCG 576
|.|||.||||.||.||.|||||.||..||||||||||||||||||||||.
BPUM_3735___s 539 CGATCATTGCGGGGGTAGCTACTTTCATTCAGCAAAAACTGATGATGGCT 588
BSNT_06291___ 577 GGCAATGCGCAGCAAAATCCGCAAATGGCGATGATGCTTTGGATTATGCC 626
||.|||.|...|.|.||.||.|||||||||||.|||.|.|||.|||||||
BPUM_3735___s 589 GGAAATCCTTCGGACAACCCTCAAATGGCGATCATGTTATGGGTTATGCC 638
BSNT_06291___ 627 AATTATGATTATCGTATTTGCGATCAACTTCCCGGCGGCTCTTTCTCTTT 676
.||||||||.||.||||||||.||.|..|||||.||.||.|||||..|.|
BPUM_3735___s 639 GATTATGATCATTGTATTTGCTATTAGTTTCCCAGCAGCACTTTCATTGT 688
BSNT_06291___ 677 ATTGGGTAGTCGGTAACTTGTTTATGATTGCGCAAACTTTCCTCATTAAA 726
|.|||||.||.||||||.|.||.|||||....|||||.||..|.||||||
BPUM_3735___s 689 ACTGGGTTGTAGGTAACATTTTCATGATCATCCAAACATTAGTGATTAAA 738
BSNT_06291___ 727 GGACCTGATATTAAAA--------AAAATCCTGAGCCGCAAAAAGCCGGA 768
...|||.| |.||||| |||| .|||||||.||.
BPUM_3735___s 739 ACTCCTCA-AGTAAAATTAGATACAAAA----------GAAAAAGCTGGC 777
BSNT_06291___ 769 GGAAAGAAAAAGTGA 783
|||||.|||||.|||
BPUM_3735___s 778 GGAAATAAAAAATGA 792
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