Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06290 and BPUM_3734
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_06290___jag.1.24716.seq
# -bsequence dna-align/BPUM_3734___jag.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06290___jag-BPUM_3734___jag.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06290___jag-BPUM_3734___jag.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06290___jag
# 2: BPUM_3734___jag
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 691
# Identity: 405/691 (58.6%)
# Similarity: 405/691 (58.6%)
# Gaps: 131/691 (19.0%)
# Score: 997.5
#
#
#=======================================
BSNT_06290___ 1 GTG-AGGAATGTGACTGCTGCAGGGCGAAATGTCGATGAAGCAGTACAGT 49
.|| ||||| .|.|||||||..||.||.|...||||.|||||||||.|.|
BPUM_3734___j 1 ATGAAGGAA-ATAACTGCTGTCGGTCGCACAATCGAAGAAGCAGTAGATT 49
BSNT_06290___ 50 CCGGATTGCAA------GAGCTGGGAT-TAACGAAGGATAAGGTAGAAAT 92
|||||.|..|| .|||| | ||| |||.|.|| |||||.||
BPUM_3734___j 50 CCGGACTTAAACAAATTCAGCT----TCTAA--AAGAAGAA-GTAGACAT 92
BSNT_06290___ 93 TATTATTATTGAAGAGGGAAACAAAGGGTTTCTCGGCATT-TTCGGCAAA 141
.|..|||.|.||.||.|||||.|||||| ||||..|.||| ||.||.|||
BPUM_3734___j 93 CACAATTGTGGATGAAGGAAATAAAGGG-TTCTTAGGATTATTTGGTAAA 141
BSNT_06290___ 142 ----AAGCCTGCGATCGTAAAGCTGGTTGAAAAGATTGATCCGATTCAGC 187
||| ||| |.||.||..||||.|||||||...||.|..||.|..
BPUM_3734___j 142 AGACAAG-CTG---TAGTCAAATTGGTAGAAAAGAGAAATGCTCTTAAAT 187
BSNT_06290___ 188 AAGCGAAGTTATATCTTCAAACGATCGCCGAAGCCATTG--CC----GGG 231
.|||.|....||||.|..|.|..||.|...||.|||||| || |.|
BPUM_3734___j 188 TAGCTACACAATATTTAGATAATATTGTTAAATCCATTGATCCTAAAGCG 237
BSNT_06290___ 232 AAGTCTGATGTGACTGTT--CAAGAA--AGC--AAAAAG----------A 265
|| ||.|||| |||..| ||| |||||| |
BPUM_3734___j 238 AA---------GATTGTTTCCAAACAGGAGCCGAAAAAGATTTCTTTCCA 278
BSNT_06290___ 266 CAGTGA--GATATCATATAACAGGTGAAAAGGCAGCATTGTTGATTGGGA 313
||.||| ||.|| |||| |..||||..|||||||.|
BPUM_3734___j 279 CATTGATGGAGAT-------------AAAA--CGTCATTAATGATTGGAA 313
BSNT_06290___ 314 AAAGAGGACAAACCTTAAACGCTCTTGAAACTTTGACACAGCTTGCCCTT 363
|||||||||||||.||..||.||.|.|||||||||..||||.|.|...||
BPUM_3734___j 314 AAAGAGGACAAACTTTGTACTCTTTAGAAACTTTGGTACAGTTAGTGTTT 363
BSNT_06290___ 364 AACCGTTATCCAGGCCAATACAAAAATGTGACGGTGGATGCAGAAAACTA 413
||.||.|||.|.|..||.||..|..||.|.||..|.|||...|.|.|.||
BPUM_3734___j 364 AATCGCTATTCTGATCAGTATCATCATATTACCATTGATATTGGAGATTA 413
BSNT_06290___ 414 TCGTTTGAAAAGAAAAGAAACAC-TGAGCCAGCTGGCCATCAAGCTTGCT 462
|.|...|||..||.|||||.||| |||.|.|..| |||.|||||...||.
BPUM_3734___j 414 TAGGAAGAAGCGACAAGAAGCACTTGAACAATAT-GCCGTCAAGACGGCA 462
BSNT_06290___ 463 GACCAAGTTTTGAAAACGA----AAAAATCCATCCAGCTT-GAGCCTATG 507
.||.|||||||.||||||| ||||.|.|| ||| ||.||.|||
BPUM_3734___j 463 AACAAAGTTTTAAAAACGAAGAGAAAAGTTCA-----CTTAGAACCAATG 507
BSNT_06290___ 508 CCGTCCAGCGAAAGAAAAATTATTCA---------CGATACTCTTTCTGG 548
||.||.|.||||.|||||.|.||||| ||.||||.|||||
BPUM_3734___j 508 CCTTCGAACGAACGAAAAGTAATTCATGATACGATCGCTACTTTTTCT-- 555
BSNT_06290___ 549 ATATGCAAA-------CCACCAGATCAAAACATATTCAATGGGTGAAGGC 591
||| ||||...|||..||.||| || ||| ||
BPUM_3734___j 556 ------AAAGAACTAGCCACGGCATCGGAAGATA--CA---GGT--AG-- 590
BSNT_06290___ 592 GAAAATCGTCATCTCGT-----TATTTCCCATAAAAGATAG 627
.||.||||||.|.|| |.| ||||||.|||.
BPUM_3734___j 591 --TAAGCGTCATGTAGTGGTGCTGT-----ATAAAAAATAA 624
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