Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06150 and BPUM_3663
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_06150___yydK.1.24716.seq
# -bsequence dna-align/BPUM_3663___yydK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06150___yydK-BPUM_3663___yydK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06150___yydK-BPUM_3663___yydK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06150___yydK
# 2: BPUM_3663___yydK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 735
# Identity: 497/735 (67.6%)
# Similarity: 497/735 (67.6%)
# Gaps: 48/735 ( 6.5%)
# Score: 1473.0
#
#
#=======================================
BSNT_06150___ 1 ATGTTAAAATACCAGCAAATCGC-AGCGGAAATTGAAACATATATAGAAG 49
||||||||.||.||.|||||.|| ||| ||.|||||||.||||||.|
BPUM_3663___y 1 ATGTTAAAGTATCAACAAATTGCGAGC-GATATTGAAAAATATATTG--- 46
BSNT_06150___ 50 AACACC----AGCTTCAGCAGGGAGACAAACTGCCAGTCCTGGAAACCCT 95
.|||| ||||.|||||.||||||||.||.||.||.||.||||||||
BPUM_3663___y 47 -TCACCCATGAGCTACAGCAAGGAGACAAGCTTCCTGTACTCGAAACCCT 95
BSNT_06150___ 96 CATGGCCCAGTTTGAAGTCAGCAAAAGCACAATTA-CAAAGTCCCTCGAG 144
||||..|||.||||..||.|||||||||||.|||| |||| ||..|.||.
BPUM_3663___y 96 CATGAGCCAATTTGCTGTGAGCAAAAGCACCATTATCAAA-TCATTAGAC 144
BSNT_06150___ 145 CTATTAGAGCAAAAAGGCGCGATCTTTCAAGTCAGAGGAAGCGGCATTTT 194
.||.|.||...||||||....||||.||||||.||.||.||||||||.||
BPUM_3663___y 145 TTACTCGAAAGAAAAGGAATTATCTATCAAGTGAGGGGCAGCGGCATCTT 194
BSNT_06150___ 195 CGTCAGAAAACATAAACGAAAAGGCTATATCAGCCTTCTGTCGAATCAGG 244
.||..|||.|||.|.|||.||.|||||.|||||||||.|.||.||.||.|
BPUM_3663___y 195 TGTTCGAAGACACAGACGCAAGGGCTACATCAGCCTTTTATCCAACCAAG 244
BSNT_06150___ 245 GGTTTAAAAAAGATCTCGAGGA-TTTCAACGTCACCTCAAAAGTCATCGA 293
||||||||||||||.|.||||| ||||||| |.||.|||.|.|| |..|
BPUM_3663___y 245 GGTTTAAAAAAGATTTAGAGGAGTTTCAAC-TGACATCAGAGGT--TTTA 291
BSNT_06150___ 294 A--CTGGACGTGAGAAAGCCGACACCG--GAAGCGGCGGAAAATCTGAAC 339
| ||||||...|..||.||| .||| |||||.|||...|||.||||.
BPUM_3663___y 292 ATGCTGGACACCATCAAACCG--CCCGAAGAAGCAGCGCTTAATTTGAAT 339
BSNT_06150___ 340 ATCGAAATAAACGAAGACATCTACTATGTCAAAAGGGTCCGCTACATCAA 389
||.|||..|.|.||.||..|.|..||..|||||.|..||||.||.|||||
BPUM_3663___y 340 ATTGAAGAAGAAGAGGATGTTTTTTACCTCAAACGCATCCGTTATATCAA 389
BSNT_06150___ 390 CGGCCAGACCCTTTG-CTACGAAGAATCCTATTACAACAAATCCATCGTG 438
.||.||.|||.|.|| ||| |||||||||||||||...|||.|||||.|.
BPUM_3663___y 390 TGGACAAACCTTATGTCTA-GAAGAATCCTATTACCGAAAAACCATCATT 438
BSNT_06150___ 439 ACGTATTTAAACAACGAAATCGTTTCCCACTCCATCTTCCATTACATCCG 488
.|.|||.|.||||..|||||.|...||.|.||..|.||..|.|..||..|
BPUM_3663___y 439 CCCTATCTCAACACAGAAATTGCCGCCGATTCTGTTTTTAAATTTATAAG 488
BSNT_06150___ 489 GGAAGGACTGGGGTTGAAGATTGGTTTTTCTGATTTGTTTCTGCACGTGG 538
.|||||.||.|||.|.||..|.||.|||||.|||.|||...||||.||.|
BPUM_3663___y 489 TGAAGGCCTTGGGCTCAAAGTCGGCTTTTCCGATATGTACTTGCAAGTAG 538
BSNT_06150___ 539 GCCAGCTTAATGAGGAA--GAAGCGGAATA-TTTGGGATTAGAGGCTGGA 585
|..|.||.||||| || |||||..||.| .|.||..|||.| |..||
BPUM_3663___y 539 GAAAACTGAATGA--AACCGAAGCAAAACACCTCGGCCTTAAA--CAAGA 584
BSNT_06150___ 586 C--TGCCGAAGCT------GTATATAGAAAGTATTTTTCACCTGACAAAT 627
| |.|| ||| | |.||||...|.|||||.||.|||||.
BPUM_3663___y 585 CGATCCC---GCTCTCCGCG----TCGAAACCGTCTTTCATCTCACAAAC 627
BSNT_06150___ 628 GGGCAGCCGTTTGATTACTCGAAGATTTCGTATAATTATGAGCAGTCGCA 677
||.|||||.||.||.|.||||||.||..|.|||||.||...|||.||.||
BPUM_3663___y 628 GGCCAGCCTTTCGACTTCTCGAAAATCACATATAACTACATGCAATCCCA 677
BSNT_06150___ 678 GTTTGTGGTGCAGGCTAATAGTTTTTTAT-TGTGA 711
.|||.|..|.|||||.|||| .||.|||| .||||
BPUM_3663___y 678 ATTTTTTATTCAGGCGAATA-ATTATTATGGGTGA 711
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