Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05816 and BPUM_3450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_05816___ywdA.1.24716.seq
# -bsequence dna-align/BPUM_3450___ywdA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05816___ywdA-BPUM_3450___ywdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05816___ywdA-BPUM_3450___ywdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05816___ywdA
# 2: BPUM_3450___ywdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity: 165/365 (45.2%)
# Similarity: 165/365 (45.2%)
# Gaps: 142/365 (38.9%)
# Score: 414.0
#
#
#=======================================
BSNT_05816___ 0 -------------------------------------------------- 0
BPUM_3450___y 1 GTGGAATTATGGTATCATTTTAAAATATATACAGCTGAGGCTGACGTTTA 50
BSNT_05816___ 1 ----------------------------------TTGAAT---ATACATG 13
|||||| |.|||..
BPUM_3450___y 51 TCCAAATGCGATAGGACAAAAAGGGGTTGTTTACTTGAATTCAAAACAGC 100
BSNT_05816___ 14 AACAGA-----AGATAACACCGGAATGTTTGGA---AAAGGCTGCTAACC 55
|.|.|| |||.||| |.||||| ||.|||.| |.|
BPUM_3450___y 101 AGCCGACGACTAGAAAAC--------GCTTGGAGACAATGGCAG---ATC 139
BSNT_05816___ 56 AAGTTGAAGATAAGCGGGAAGAATATAAGGATGTGCTGCTTCAGCTGAAA 105
|.|||||||||||.||.|||||||||||.||..||||..||||..|..||
BPUM_3450___y 140 ATGTTGAAGATAAACGTGAAGAATATAAAGAATTGCTCATTCAAGTCCAA 189
BSNT_05816___ 106 AAAATGCTTGGCGGAAC-------AACGCCGCACAG--TGAAACGGCGGA 146
...||.||.|| .|||| |..||.|.| || |.|||.| .||
BPUM_3450___y 190 TCTATTCTCGG-TGAACCTTCTCTAGAGCAGGA-AGAATTAAAAG--AGA 235
BSNT_05816___ 147 AATTCTC----ACGCGGGCATATGAACAAATGAAGGAATATGCACTT-TT 191
|..|.|| ||| |||.||||||||||.|||||||| ||| ||
BPUM_3450___y 236 AGCTGTCAGATACG------TATAAACAAATGAAAGAATATGC-CTTATT 278
BSNT_05816___ 192 TGTTCAGTCGATAGAAACATTTTTGAGGAAATCTGC-AAACAATTT---- 236
||||.|.||.||.|||.|.|||.|..|.|||...|| |||.|||.|
BPUM_3450___y 279 TGTTGAATCTATTGAAGCCTTTATTCGAAAAATGGCGAAAGAATCTGATC 328
BSNT_05816___ 237 --AAAAATTAAATAA 249
.||||.||.
BPUM_3450___y 329 AGCAAAAGTAG---- 339
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