Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05771 and BPUM_3423
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:20
# Commandline: needle
# -asequence dna-align/BSNT_05771___ywfE.1.24716.seq
# -bsequence dna-align/BPUM_3423___bacD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05771___ywfE-BPUM_3423___bacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05771___ywfE-BPUM_3423___bacD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05771___ywfE
# 2: BPUM_3423___bacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1516
# Identity: 1007/1516 (66.4%)
# Similarity: 1007/1516 (66.4%)
# Gaps: 191/1516 (12.6%)
# Score: 3088.5
#
#
#=======================================
BSNT_05771___ 1 ATGGAG-AGAAAAACAGTATTGGTCATCGCTGATCTTGGAGGCTGCCCGC 49
|.||| |.||||||.|||.|.|||||.||||||||.|||||.|||||||
BPUM_3423___b 1 -TTGAGTAAAAAAACCGTACTTGTCATTGCTGATCTGGGAGGATGCCCGC 49
BSNT_05771___ 50 CGCACATGTTTTATAAAAGCGCTGCTGAAAAATATAACCTGGTCAGCTT- 98
|.||.|||||||||.||||||..||||.|...|||.|..|.|| ..|||
BPUM_3423___b 50 CCCATATGTTTTATGAAAGCGTGGCTGCATCGTATCATATCGT-TTCTTA 98
BSNT_05771___ 99 TATTCCAAGACCTTTTGCAATTACA----GCCTCCCATGCAGCATTGATT 144
|||.||.|||||.|||||.|||||| |.|.|.| || ||| |.||.
BPUM_3423___b 99 TATCCCGAGACCCTTTGCTATTACAAAGGGACACGC-TG-AGC--TAATC 144
BSNT_05771___ 145 GAAAAATACTCGGTCGCGGTCATAAAAGATAAAGACTATTTTAAGAGTTT 194
|||||||||||..|.||||||||.||||||...||.||||||.| |
BPUM_3423___b 145 GAAAAATACTCTATTGCGGTCATCAAAGATCGGGATTATTTTGA-----T 189
BSNT_05771___ 195 A-----GCTGATTTTGAGCATCCTGATTCCATTTATTGGGCGCATGAGGA 239
| .||..||||||.||.||||||||.|||||||||||.|||||.||
BPUM_3423___b 190 ACAAATCCTTCTTTTGAACACCCTGATTCGATTTATTGGGCACATGATGA 239
BSNT_05771___ 240 TCATAACAAGCCTGAGGAAGAGGTCGTCGAGCAAATCGTCAAGGT--TGC 287
|.||...||..|.|||||||||||.|||||..|..|||| | ||.
BPUM_3423___b 240 TTATCTGAAATCAGAGGAAGAGGTGGTCGATGACCTCGT-----TCGTGT 284
BSNT_05771___ 288 CG-----------AAATGTTTGGGGCGGATGCCATCACAACAAACAATGA 326
|| ||| ||.|||||.||.||.||.||.|||||
BPUM_3423___b 285 CGCTTCCTTTTTCAAA--------GCAGATGCGATTACCACCAATAATGA 326
BSNT_05771___ 327 ATTATTCATTGCTCCGATGGCGAAAGCCTG-TGAACGTCTGGGCCTGAGA 375
||||||||||||.||.|||||.|||| ||| .||.||.||.||.|||.|.
BPUM_3423___b 327 ATTATTCATTGCACCAATGGCAAAAG-CTGCAGAGCGACTTGGGCTGCGC 375
BSNT_05771___ 376 GGTGCCGGCGTGCAGGCAGCCGAAAATGCCAGAGATAAAAATAAAATGAG 425
||.|||||.||..|||||||.|||...||..|.|||||||...|||||||
BPUM_3423___b 376 GGCGCCGGGGTAAAGGCAGCTGAATTAGCGCGTGATAAAAGCCAAATGAG 425
BSNT_05771___ 426 GGACGCTTTTAATAAGGCCGGAGTCAAATCGATCAAAAACAAACGAGTCA 475
||..||.||.||..||||.||.||||||.|..|.||||..||.|..||||
BPUM_3423___b 426 GGCTGCATTCAACGAGGCTGGGGTCAAAGCAGTGAAAACTAAGCCTGTCA 475
BSNT_05771___ 476 CAACTCTTGAAGATTTCCGTGC-TGCTCTTGAAGAGATCGGCACACCTCT 524
|||||.|.|..|||||.| .|| .||..||||..|.|||||.|||||.||
BPUM_3423___b 476 CAACTTTAGCTGATTTTC-AGCAAGCCATTGAGCATATCGGGACACCGCT 524
BSNT_05771___ 525 TATCTTAAAGCCTACATACTTAGCGAGTTCAATCGGTGTAACGCTGATTA 574
|||.||||||||||||||.|||||.||.||.||.||.||.||.||..||
BPUM_3423___b 525 TATTTTAAAGCCTACATATTTAGCAAGCTCCATTGGCGTGACCCTTTTT- 573
BSNT_05771___ 575 CGGACACTGA----GACGGCAGAAGATG----AATTTAACAGAGT-CAAT 615
|| ||| |.|||||| .|||| ..|||.|| |.|| ||||
BPUM_3423___b 574 ----CA-TGATCGTGCCGGCAG-TGATGGTCTCTTTTTAC-GCGTACAAT 616
BSNT_05771___ 616 GACTATCTGAAATCAATTAACGTGCCAAAGGCGGTTACGTTTGAAGCGCC 665
.||||.||.||.|.||...|||.|||||.||.||.||||.||||||.|.
BPUM_3423___b 617 -CCTATTTGCAAACCATCCCCGTTCCAAACGCTGTGACGTATGAAGCACG 665
BSNT_05771___ 666 GTTTATCGCTGAAGAATTTTTACAGGGTGAGTACGGAGACTGGTATCAA- 714
||||.||||||||...|..|||.|||||...||||..||.|||||||||
BPUM_3423___b 666 GTTTGTCGCTGAAACGTACTTAGAGGGTTCTTACGAGGATTGGTATCAAG 715
BSNT_05771___ 715 ACAGAAGGGTACTCCGACTATATCAGTATAGAAGGCATCA-TGGCTGACG 763
|| ||.||.||.||.||.|||.|||||.||||||| ||.| |.|.|||.|
BPUM_3423___b 716 AC-GACGGCTATTCTGATTATGTCAGTGTAGAAGG-ATTAGTTGTTGAGG 763
BSNT_05771___ 764 GTGAGTATTTCCCGATCGCCATTCATGATAAAACGCCGCAAATCGGGTTT 813
|.||.|||.||||..|.|.||||||||||||.||.||.|||.||||.||.
BPUM_3423___b 764 GAGAATATATCCCATTTGTCATTCATGATAAGACCCCTCAAGTCGGATTC 813
BSNT_05771___ 814 ACAGAGACATCCCACATTACGCCGTCCATTCTGG---ATGAAGAGGCAAA 860
|||||.|||.|.||.||.||.|||||.||.||.| ||||||.|
BPUM_3423___b 814 ACAGAAACAGCTCATATCACTCCGTCGATCCTAGACAATGAAGCG----- 858
BSNT_05771___ 861 AAAGAA---AATTGTCGAAGCTGCCAAAAAGGCAAATGAAGGGCTTGGCC 907
.||.| .||..|.||.||.||.|||||.||||||||.|||.|.||.|
BPUM_3423___b 859 -CAGCACCTCATCATTGAGGCAGCAAAAAAAGCAAATGAGGGGTTAGGAC 907
BSNT_05771___ 908 TGCAAAATTGCGCAACACATACAGAGATCAAGCTAATGAAAAACAGAGA- 956
|..||||.|||||.||.|||||||||||||||||.||||||||.||.||
BPUM_3423___b 908 TTGAAAACTGCGCCACTCATACAGAGATCAAGCTTATGAAAAATAGGGAT 957
BSNT_05771___ 957 ACCGGGTTTAATAGAGTCGGCAGCCAGATTCGCAGGCTGGAATATGATTC 1006
||| ||.|||||.||.||.|||||.|||||.||.||||||||||||||||
BPUM_3423___b 958 ACC-GGATTAATTGAATCAGCAGCTAGATTTGCTGGCTGGAATATGATTC 1006
BSNT_05771___ 1007 CTAATATTAAAAAGGTCTTTGGCCTTGATATGGCGCAA------------ 1044
|.|||||.|||||.||||||||..|.|||||||| |||
BPUM_3423___b 1007 CGAATATCAAAAAAGTCTTTGGGGTCGATATGGC-CAAGCTGCTCATTGA 1055
BSNT_05771___ 1045 -TTATTATTAGATGTCCTCTGTTTCGGAAAAGACGCCGATCTGCC----G 1089
.|||||.|.||| ||||||.|.||.|||.|||| |
BPUM_3423___b 1056 TGTATTAGTCGAT------------GGAAAAAAAGCTGATTTGCCAAAAG 1093
BSNT_05771___ 1090 GACGGATTATTGGATCAAGAGCCTTATTATGTTGCCGACTGCCATTTGTA 1139
.||...||..||| |||...|| |||||.|.||.||.||.|||||.||
BPUM_3423___b 1094 AACTACTTTCTGG-TCATACGC---ATTATATAGCAGATTGTCATTTATA 1139
BSNT_05771___ 1140 CCCGCAGCATTTCAAACAAAATGGCCAGATTCCAGAAACCG-CTGAGG-- 1186
|||.||||||||||||.|.|..||.||.||| ||| ||||||
BPUM_3423___b 1140 CCCTCAGCATTTCAAAGAGAGCGGACACATT-------CCGCCTGAGGTC 1182
BSNT_05771___ 1187 ------AT-----TTGGTCAT-TGAAGCGATCGATATTCCGGACGGGC-T 1223
|| |||.|||| || .||||||||.| ||.| .
BPUM_3423___b 1183 ACACACATCACCATTGATCATGTG--------TATATTCCGCA-GGACAC 1223
BSNT_05771___ 1224 TTTAAAAGGGGATACTGAAATCGTTTCATTTTCAG-----CCGCAGCACC 1268
||||...||.||||||| ||||..|||| ||||..||||
BPUM_3423___b 1224 TTTAGTTGGAGATACTG--------TCATCATCAGTGAATCCGCTCCACC 1265
BSNT_05771___ 1269 ---AGGCACTTCAGTTGATTTGACATTGTTTGAAGCTTTCAATTCCATTG 1315
|||.||.|..||.||||||.|.||.||||||||.||.|||..|||.|
BPUM_3423___b 1266 TAAAGGAACCTTTGTCGATTTGTCTTTATTTGAAGCCTTTAATGGCATCG 1315
BSNT_05771___ 1316 CTG-CATTTGAACTGAAAGGCAGT--AATTCACAGGATGTGGCTGAATCA 1362
|| |..|||||.|.||||| || ..|||.||||||||.||.|..||.
BPUM_3423___b 1316 -TGTCTCTTGAATTAAAAGG--GTCGTCTTCTCAGGATGTTGCCGCCTCC 1362
BSNT_05771___ 1363 ATCAGACAA-ATTCAGCAGCATGCA------AAGCTGACGGCAAAGTAT- 1404
|||.| ||| |||||..||||.||| .||.|.|.|| |.|.||
BPUM_3423___b 1363 ATCCG-CAACATTCAAAAGCAGGCATCCATTCAGTTAATGG--ATGAATT 1409
BSNT_05771___ 1405 -GTGCTGCCAGTATGA 1419
|||..| |.||.|
BPUM_3423___b 1410 AGTGAAG---GGATAA 1422
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