Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05654 and BPUM_3346
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05654___racA.1.24716.seq
# -bsequence dna-align/BPUM_3346___racA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05654___racA-BPUM_3346___racA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05654___racA-BPUM_3346___racA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05654___racA
# 2: BPUM_3346___racA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 645
# Identity: 357/645 (55.3%)
# Similarity: 357/645 (55.3%)
# Gaps: 186/645 (28.8%)
# Score: 904.0
#
#
#=======================================
BSNT_05654___ 1 ATGAATACAAATATGGTAGCAAGTGAACTCGGCGTCTCCGCAAAAACGGT 50
.|||||||||||..|||.||||..|||.|.|||||.||..||||||||.|
BPUM_3346___r 1 TTGAATACAAATGAGGTTGCAAAAGAAATTGGCGTTTCTTCAAAAACGAT 50
BSNT_05654___ 51 GCAGCGGTGGGTGAAGCAGCTGAATCTTCCGGCCGAACGCAATGAGCTCG 100
.|||||.|||||.||.|||||.||..|.||.|.||..||.|||||.||.|
BPUM_3346___r 51 TCAGCGTTGGGTCAAACAGCTCAACATCCCTGTCGCCCGGAATGAACTTG 100
BSNT_05654___ 101 GACACTATTCGTTCACGGCAGAAGACGTGAAG--GTTCTAAAATCCGTTC 148
||||.|||...||| |.||||| .||.||.|| |.|.||
BPUM_3346___r 101 GACATTATGAATTC-----------CATGAAGATATTGTACAA-CTGCTC 138
BSNT_05654___ 149 AAA----------AACAAATCTCTGAAGGCACGGCGA---TTCAGGATAT 185
||| |.|||||...|||.|| .|.|| ||||.||.||
BPUM_3346___r 139 AAAGAAGTCAAACACCAAATGAGTGAGGG---TGTGATCCTTCAAGACAT 185
BSNT_05654___ 186 TCATCTGCCGA---------AAAGCGCTAAAAAG----CGCACAGGCTTC 222
||..|||||.| |||.||.|.||.|| ||| ||.|
BPUM_3346___r 186 TCGACTGCCAATCCACTCAGAAACCGTTCAACAGTTATCGC-----CTGC 230
BSNT_05654___ 223 CTTGTCCAAAAAAC--AAGTAGCGAC-ACAGAACGAAGAATCGAGCAGCT 269
||| |.|||| |.||..|.|| | |||| ||.|..|||| |
BPUM_3346___r 231 --TGT---AGAAACTGATGTCTCTACTA---AACG--GATTGAAGCA--T 268
BSNT_05654___ 270 TGAACAAAAGC---TGGA-CA-CCCTTTTA-CAGCAAAGGCA-------- 305
| |.|||||| ||.| || |.|.||.| ||||||..|||
BPUM_3346___r 269 T--AGAAAAGCAAGTGAATCAGCTCATTCAGCAGCAATTGCACAGCACTG 316
BSNT_05654___ 306 --GGACGAAAGCGAATTGATGGCAAGGATGTCGGAACTGGAACGCCAGCT 353
|.|..|||.|||.| |||| |||||.|||||
BPUM_3346___r 317 ATGTAGAAAAACGACT-----GCAA--------GAACTTGAACG------ 347
BSNT_05654___ 354 GAAA------CAAAAAGCCGATGAAGGTGTATCTTACCAGCTGCTTCAGC 397
|||| .|||||||.||.|||||||||||.|||||||||||.||||
BPUM_3346___r 348 GAAATTGGCTAAAAAAGCGGACGAAGGTGTATCATACCAGCTGCTCCAGC 397
BSNT_05654___ 398 ACCGCAGAGAAATCGATGA---------TATTCTTGCAG-ATCTG----- 432
|||||||||||||.||.|| ||..|||| || .||||
BPUM_3346___r 398 ACCGCAGAGAAATTGAAGATCTCACCACTAAACTTG-AGCGTCTGACCGA 446
BSNT_05654___ 433 ------CAATCAATGACCTCACAAAT----GAAA-----GAATTCACCGC 467
.||.||| .||||.||||| |||| |||.||||
BPUM_3346___r 447 AAGATTAAAACAA--CCCTCTCAAATAGAAGAAAAAAAGGAAATCAC--- 491
BSNT_05654___ 468 TCAGCCGATCCCCGAGACTGCTGCTGCTTCTGAAAAAACCAAAACGAGAA 517
||..| ||||.|..| ||
BPUM_3346___r 492 ----------------------GCAAC--CTGACATCA----------AA 507
BSNT_05654___ 518 AAAAACCG-CTGCTGT---CACTGTTCAA---ATTTCAAACCTAA 555
|||||.|| .||||.| |.|||||..| ||||| .||||
BPUM_3346___r 508 AAAAAGCGTGTGCTCTTCCCTCTGTTTCATTCATTTC---GCTAA 549
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