Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05638 and BPUM_3336
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_05638___ywlG.1.24716.seq
# -bsequence dna-align/BPUM_3336___ywlG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05638___ywlG-BPUM_3336___ywlG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05638___ywlG-BPUM_3336___ywlG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05638___ywlG
# 2: BPUM_3336___ywlG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 604
# Identity: 362/604 (59.9%)
# Similarity: 362/604 (59.9%)
# Gaps: 125/604 (20.7%)
# Score: 1005.5
#
#
#=======================================
BSNT_05638___ 1 ATGAA---TGAGTTGAAACAA-----ACGTGGAAGACGATGCTGTCT--- 39
||||| || || ||| .|.||||| ||| |
BPUM_3336___y 1 ATGAACATTG-GT-----CAAGATTGGCTTGGAA--------TGT-TAAA 35
BSNT_05638___ 40 -GAGTTTCA------GGACCAA--GCGGAATTGAAACAAGATCAGCTCTT 80
|||||||| ||.|.|| |||...|.|..||| ||||
BPUM_3336___y 36 AGAGTTTCATCAAATGGTCGAACTGCGTGCTGGGCACA--------TCTT 77
BSNT_05638___ 81 CGTCCTTGGATGCAGCACGAGC-GAAGTGGCCGGCAGCCGG-----ATCG 124
.||..|.||||||||.|| |.| ||||||||.|| || ||.|
BPUM_3336___y 78 AGTGATCGGATGCAGTAC-ATCAGAAGTGGCTGG-----GGAGCATATTG 121
BSNT_05638___ 125 GCACATCGGGCAGTGTAG-ATATCGCTGAAAGCATCTA-CAGCGGACTTG 172
|.|||.|.||.|||| || |.|||||||.....||||| || .||.||
BPUM_3336___y 122 GGACAGCAGGAAGTG-AGCAAATCGCTGTGTCTATCTATCA--AGAATT- 167
BSNT_05638___ 173 CTGAGCTCCGGGA-----AAAAACGGGAATCCATCTGGCGTTTCAATGCT 217
||.||.|..| |.||||.||.||..|.|||||.||.||.||||
BPUM_3336___y 168 ---AGATCAGTTAAGACGAGAAACTGGCATTGAGCTGGCTTTCCAGTGCT 214
BSNT_05638___ 218 GCGAGCATTTAAACAGAGCGCTTGTCGTCGAAGCAGAAACAGCCAAGCTG 267
|.||||||.|.||..|.||.|||||.||.||||.||||...|| .
BPUM_3336___y 215 GTGAGCATCTGAATCGTGCTCTTGTTGTGGAAGAAGAAGTGGC------T 258
BSNT_05638___ 268 TTCAGGCTTCCAACC----GTTTCT----GCCGTGCCCGTTCCAAAAGCG 309
|||.||||| |||| |.||.| ||.||.||.||.|.|||.|||
BPUM_3336___y 259 TTCCGGCTT--AACCTAGAGATTGTGGAGGCAGTACCTGTCCGAAAGGCG 306
BSNT_05638___ 310 GGCGGAGCGATGGCGTCTTATGCGTTTAAGCAGATGAAGTCTCCTGTTCT 359
||.||..||||||||.||.||||||.|.||||.|||.|...||||||..|
BPUM_3336___y 307 GGTGGTTCGATGGCGGCTCATGCGTATCAGCACATGGAACATCCTGTGTT 356
BSNT_05638___ 360 TGTTGAAACCATTCAGGCTGACGCCGGAATTGATATAGGCGATACGTTTA 409
.||||||.||||..||||..|.||.|||||||||||.||.|||||.||.|
BPUM_3336___y 357 AGTTGAATCCATCGAGGCGCATGCTGGAATTGATATTGGTGATACATTCA 406
BSNT_05638___ 410 TCGGCATGCATCTGAAGCCGGTGGCTGTCCCTGTGCGTGTCTCTCAAAAC 459
|.||.||||||||.|||...||.|||||.|||||.|
BPUM_3336___y 407 TTGGGATGCATCTAAAGAGAGTCGCTGTACCTGTTC-------------- 442
BSNT_05638___ 460 AGCCTCGGT-----TCA----------GCTCATGTGACATTGGCGCGTAC 494
|||||.|| ||| ||.|||||||||||.|||...||
BPUM_3336___y 443 -GCCTCAGTCGCCATCAATTAGGGCATGCACATGTGACATTTGCGAAAAC 491
BSNT_05638___ 495 ACGGCCGAAACTAATCGGCGGAGTGCGGGCGGTTTAT--GAGTGTGAATG 542
.||.|||||.||.||.|||||||..||.||||||||| .|| ||.
BPUM_3336___y 492 GCGTCCGAAGCTGATTGGCGGAGAACGAGCGGTTTATACAAG-----ATC 536
BSNT_05638___ 543 A--- 543
|
BPUM_3336___y 537 ATAG 540
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